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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.8 nTPM
HPA:67.8 nTPM
GTEx:75.6 nTPM
FANTOM5:97.3 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
2411 Female, age 72, unknown 66.4
1870 Female, age 42, unknown 66.3
2019 Male, age 18, unknown 66.0
1827 Male, age 72, unknown 64.5
1830 Male, age 51, unknown 64.4
1833 Male, age 53, unknown 64.2
2219 Male, age 76, both hemispheres 63.8
2666 Male, age 74, left hemisphere 62.6
2586 Male, age 75, left hemisphere 61.9
2828 Female, age 72, unknown 61.3
Dorsal raphe nucleus
nTPM: 65.7
2298 Female, age 72, unknown 68.2
1828 Male, age 53, unknown 66.8
2750 Male, age 76, both hemispheres 65.7
2047 Male, age 72, unknown 64.7
2016 Female, age 72, unknown 63.0
Inferior colliculus
nTPM: 65.1
2097 Female, age 72, unknown 66.9
1848 Female, age 42, unknown 64.9
1890 Male, age 53, unknown 64.9
2849 Male, age 72, unknown 63.6
Median raphe nucleus
nTPM: 67.8
2220 Male, age 76, midline 67.8
Pedunculopontine tegmental nucleus
nTPM: 67.1
1921 Female, age 85, both hemispheres 68.1
2334 Male, age 80, both hemispheres 66.8
2338 Male, age 61, both hemispheres 66.6
Periaquaductal grey, anterior
nTPM: 64.5
1947 Male, age 18, unknown 66.8
2502 Female, age 75, unknown 64.4
1795 Male, age 51, unknown 62.5
Periaquaductal grey, dorsal
nTPM: 63.2
2850 Male, age 76, both hemispheres 64.7
1840 Male, age 53, unknown 63.7
2464 Female, age 72, unknown 62.3
1831 Male, age 72, unknown 62.2
Periaquaductal grey, lateral
nTPM: 62.1
2272 Male, age 74, both hemispheres 62.9
2053 Male, age 18, unknown 62.4
2140 Male, age 76, both hemispheres 61.1
Pretectal area
nTPM: 65.6
1944 Female, age 72, unknown 68.7
1816 Male, age 51, unknown 68.2
1817 Female, age 42, unknown 67.8
2007 Male, age 72, unknown 67.4
1815 Male, age 53, unknown 66.8
2667 Female, age 75, unknown 66.7
2224 Female, age 72, unknown 66.6
2273 Male, age 74, both hemispheres 63.3
2825 Male, age 18, unknown 63.3
2316 Male, age 76, right hemisphere 61.9
2407 Male, age 75, both hemispheres 60.5
Red nucleus
nTPM: 64.4
1821 Female, age 72, unknown 69.4
1954 Female, age 42, unknown 65.5
2823 Male, age 76, right hemisphere 65.1
1865 Male, age 51, unknown 64.6
2725 Female, age 75, unknown 64.5
2227 Male, age 72, unknown 64.3
2785 Male, age 18, unknown 64.2
2769 Male, age 72, unknown 63.9
1904 Male, age 53, unknown 63.8
2503 Female, age 72, unknown 63.5
2588 Male, age 74, left hemisphere 62.2
2584 Male, age 75, left hemisphere 61.7
Substantia nigra
nTPM: 67.3
2241 Male, age 72, unknown 70.6
1916 Female, age 42, unknown 70.1
1889 Female, age 72, unknown 69.9
2409 Female, age 72, unknown 69.1
1941 Male, age 53, unknown 68.2
1851 Male, age 51, unknown 67.1
2665 Male, age 74, both hemispheres 66.7
2699 Male, age 18, unknown 65.7
2590 Female, age 75, unknown 64.6
2583 Male, age 75, right hemisphere 61.2
Superior colliculus
nTPM: 63.3
1895 Male, age 76, right hemisphere 66.6
2087 Female, age 72, unknown 64.3
2587 Male, age 74, left hemisphere 64.3
2668 Female, age 75, unknown 64.0
1913 Female, age 42, unknown 63.5
1796 Male, age 53, unknown 63.0
1839 Male, age 51, unknown 63.0
2261 Male, age 18, unknown 62.2
1995 Male, age 72, unknown 62.1
2664 Male, age 75, both hemispheres 59.9
Ventral tegmental area
nTPM: 66.0
2218 Male, age 76, both hemispheres 67.5
1915 Female, age 42, unknown 67.3
2410 Female, age 72, unknown 67.2
2223 Female, age 72, unknown 66.6
1942 Male, age 51, unknown 64.9
2021 Male, age 53, unknown 62.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.6
Samples: 139

Max nTPM: 125.0
Min nTPM: 34.5
Std nTPM: 15.7
Median nTPM: 74.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 125.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 119.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 112.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 107.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 107.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 105.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 102.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 101.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

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The Human Protein Atlas

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