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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.1 nTPM
HPA:115.1 nTPM
GTEx:118.0 nTPM
FANTOM5:152.4 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:9.6 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.6
2828 Female, age 72, unknown 102.6
1870 Female, age 42, unknown 101.1
2666 Male, age 74, left hemisphere 93.6
1833 Male, age 53, unknown 91.0
2586 Male, age 75, left hemisphere 90.6
2411 Female, age 72, unknown 89.5
1830 Male, age 51, unknown 89.4
1827 Male, age 72, unknown 84.3
2019 Male, age 18, unknown 80.0
2219 Male, age 76, both hemispheres 74.3
Dorsal raphe nucleus
nTPM: 108.6
2047 Male, age 72, unknown 116.7
2016 Female, age 72, unknown 113.9
1828 Male, age 53, unknown 107.7
2298 Female, age 72, unknown 106.6
2750 Male, age 76, both hemispheres 98.1
Inferior colliculus
nTPM: 98.5
1890 Male, age 53, unknown 101.1
2097 Female, age 72, unknown 100.4
1848 Female, age 42, unknown 96.4
2849 Male, age 72, unknown 96.2
Median raphe nucleus
nTPM: 108.9
2220 Male, age 76, midline 108.9
Pedunculopontine tegmental nucleus
nTPM: 98.3
2334 Male, age 80, both hemispheres 102.1
2338 Male, age 61, both hemispheres 100.2
1921 Female, age 85, both hemispheres 92.4
Periaquaductal grey, anterior
nTPM: 107.3
1795 Male, age 51, unknown 114.1
1947 Male, age 18, unknown 105.6
2502 Female, age 75, unknown 102.2
Periaquaductal grey, dorsal
nTPM: 115.1
2850 Male, age 76, both hemispheres 133.3
1840 Male, age 53, unknown 120.7
1831 Male, age 72, unknown 103.3
2464 Female, age 72, unknown 103.1
Periaquaductal grey, lateral
nTPM: 113.1
2140 Male, age 76, both hemispheres 122.8
2053 Male, age 18, unknown 121.4
2272 Male, age 74, both hemispheres 95.1
Pretectal area
nTPM: 97.3
2224 Female, age 72, unknown 112.2
2667 Female, age 75, unknown 109.4
1817 Female, age 42, unknown 107.5
2825 Male, age 18, unknown 103.0
1944 Female, age 72, unknown 97.4
2316 Male, age 76, right hemisphere 95.5
1815 Male, age 53, unknown 95.0
2273 Male, age 74, both hemispheres 94.6
1816 Male, age 51, unknown 89.4
2407 Male, age 75, both hemispheres 86.7
2007 Male, age 72, unknown 79.9
Red nucleus
nTPM: 92.7
1821 Female, age 72, unknown 104.1
1954 Female, age 42, unknown 101.8
2227 Male, age 72, unknown 98.6
1904 Male, age 53, unknown 97.7
2769 Male, age 72, unknown 96.4
2823 Male, age 76, right hemisphere 95.4
2503 Female, age 72, unknown 92.7
2725 Female, age 75, unknown 90.2
1865 Male, age 51, unknown 90.0
2588 Male, age 74, left hemisphere 89.4
2785 Male, age 18, unknown 80.2
2584 Male, age 75, left hemisphere 75.7
Substantia nigra
nTPM: 98.4
2699 Male, age 18, unknown 115.1
2665 Male, age 74, both hemispheres 110.5
1916 Female, age 42, unknown 108.3
1851 Male, age 51, unknown 104.2
2241 Male, age 72, unknown 100.7
2409 Female, age 72, unknown 99.0
1889 Female, age 72, unknown 95.0
2590 Female, age 75, unknown 92.2
1941 Male, age 53, unknown 81.6
2583 Male, age 75, right hemisphere 77.4
Superior colliculus
nTPM: 93.8
1995 Male, age 72, unknown 109.4
2087 Female, age 72, unknown 104.8
1913 Female, age 42, unknown 97.0
2664 Male, age 75, both hemispheres 93.1
2668 Female, age 75, unknown 92.7
2261 Male, age 18, unknown 92.4
2587 Male, age 74, left hemisphere 90.8
1796 Male, age 53, unknown 89.6
1839 Male, age 51, unknown 89.2
1895 Male, age 76, right hemisphere 78.8
Ventral tegmental area
nTPM: 102.7
2021 Male, age 53, unknown 112.3
1915 Female, age 42, unknown 104.5
1942 Male, age 51, unknown 103.7
2218 Male, age 76, both hemispheres 102.7
2410 Female, age 72, unknown 98.0
2223 Female, age 72, unknown 94.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.0
Samples: 139

Max nTPM: 311.1
Min nTPM: 17.3
Std nTPM: 59.3
Median nTPM: 101.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 311.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 310.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 295.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 291.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 279.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 275.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 264.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 252.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 246.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 240.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 236.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.4
FF:10158-103A5 76 years, female 152.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 11.7
Sample A Female 47.6
Sample B Female 14.7
Sample C Male 13.5
Sample D Male 11.7
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 12.5
Min nTPM: 9.5
Sample B Female 12.5
Sample C Male 9.5
Sample D Male 10.8
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 16.7
Sample A Female 25.4
Sample B Female 31.3
Sample C Male 16.7
Sample D Male 25.1
Superior colliculi
nTPM: 20.8
Samples: 4

Max nTPM: 29.2
Min nTPM: 14.0
Sample A Female 22.2
Sample B Female 29.2
Sample C Male 14.0
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.1
Sample A Male 10.4
Sample B Male 9.7
Sample C Female 9.4
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69080003 Antisense, RP_050324_01_C03, Mouse strain C57BL/6J (56 days, male) 4.9
71919254 Antisense, RP_051012_02_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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