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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:42.0 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:6.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.6
2586 Male, age 75, left hemisphere 40.8
1827 Male, age 72, unknown 31.2
2219 Male, age 76, both hemispheres 29.9
2666 Male, age 74, left hemisphere 29.2
2828 Female, age 72, unknown 28.7
2411 Female, age 72, unknown 28.6
1833 Male, age 53, unknown 28.3
1870 Female, age 42, unknown 27.0
2019 Male, age 18, unknown 26.6
1830 Male, age 51, unknown 26.0
Dorsal raphe nucleus
nTPM: 28.3
1828 Male, age 53, unknown 29.6
2298 Female, age 72, unknown 29.4
2047 Male, age 72, unknown 28.7
2750 Male, age 76, both hemispheres 27.8
2016 Female, age 72, unknown 26.1
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 32.7
1848 Female, age 42, unknown 29.8
1890 Male, age 53, unknown 29.6
2849 Male, age 72, unknown 28.6
Median raphe nucleus
nTPM: 29.3
2220 Male, age 76, midline 29.3
Pedunculopontine tegmental nucleus
nTPM: 28.5
1921 Female, age 85, both hemispheres 30.9
2334 Male, age 80, both hemispheres 29.0
2338 Male, age 61, both hemispheres 25.7
Periaquaductal grey, anterior
nTPM: 31.5
1947 Male, age 18, unknown 33.2
1795 Male, age 51, unknown 31.7
2502 Female, age 75, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 26.6
1840 Male, age 53, unknown 28.9
1831 Male, age 72, unknown 26.7
2464 Female, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 24.7
Periaquaductal grey, lateral
nTPM: 25.8
2272 Male, age 74, both hemispheres 26.3
2053 Male, age 18, unknown 26.0
2140 Male, age 76, both hemispheres 25.0
Pretectal area
nTPM: 29.5
1816 Male, age 51, unknown 33.9
2007 Male, age 72, unknown 33.7
1944 Female, age 72, unknown 32.2
1817 Female, age 42, unknown 31.6
2667 Female, age 75, unknown 31.1
2825 Male, age 18, unknown 29.2
1815 Male, age 53, unknown 28.8
2224 Female, age 72, unknown 28.0
2407 Male, age 75, both hemispheres 26.0
2316 Male, age 76, right hemisphere 25.8
2273 Male, age 74, both hemispheres 24.2
Red nucleus
nTPM: 29.1
2588 Male, age 74, left hemisphere 32.2
2725 Female, age 75, unknown 31.2
1821 Female, age 72, unknown 30.9
2584 Male, age 75, left hemisphere 30.6
2769 Male, age 72, unknown 30.1
2503 Female, age 72, unknown 30.0
2227 Male, age 72, unknown 29.5
2785 Male, age 18, unknown 28.8
1954 Female, age 42, unknown 27.9
1865 Male, age 51, unknown 27.0
1904 Male, age 53, unknown 27.0
2823 Male, age 76, right hemisphere 24.4
Substantia nigra
nTPM: 31.4
1916 Female, age 42, unknown 37.8
1851 Male, age 51, unknown 34.2
2665 Male, age 74, both hemispheres 33.8
1889 Female, age 72, unknown 33.0
2583 Male, age 75, right hemisphere 31.5
1941 Male, age 53, unknown 31.4
2699 Male, age 18, unknown 29.9
2241 Male, age 72, unknown 28.9
2590 Female, age 75, unknown 27.2
2409 Female, age 72, unknown 26.6
Superior colliculus
nTPM: 28.9
1796 Male, age 53, unknown 32.6
2087 Female, age 72, unknown 31.1
2261 Male, age 18, unknown 31.1
2664 Male, age 75, both hemispheres 30.8
2668 Female, age 75, unknown 30.7
1895 Male, age 76, right hemisphere 28.2
1839 Male, age 51, unknown 27.7
2587 Male, age 74, left hemisphere 26.7
1913 Female, age 42, unknown 24.8
1995 Male, age 72, unknown 24.8
Ventral tegmental area
nTPM: 31.2
1915 Female, age 42, unknown 35.0
2218 Male, age 76, both hemispheres 33.3
2410 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 30.7
2223 Female, age 72, unknown 28.2
2021 Male, age 53, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 79.3
Min nTPM: 16.1
Std nTPM: 14.1
Median nTPM: 41.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 79.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 71.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 69.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 67.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 66.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 66.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 65.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 65.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.7
FF:10158-103A5 76 years, female 22.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 5.7
Sample C Male 13.6
Sample D Male 8.7
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.3
Sample B Female 5.4
Sample C Male 6.5
Sample D Male 5.3
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.1
Sample A Female 6.3
Sample B Female 5.1
Sample C Male 7.3
Sample D Male 5.1
Superior colliculi
nTPM: 9.5
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 8.5
Sample C Male 13.3
Sample D Male 9.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.0
Sample A Male 6.2
Sample B Male 6.2
Sample C Female 5.0
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
67978412 Antisense, RP_040923_01_B04, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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