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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		26.350
RNA expressioni
Consensus:31.8 nTPM
HPA:31.8 nTPM
GTEx:39.1 nTPM
FANTOM5:83.7 Scaled Tags Per Million
Pig:114.6 nTPM
Mouse:91.9 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008057Antibody CAB002059
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA008057
Hippocampal formation mean intensity 26.350
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 11.719
Molecular layer of the dentate gyrus 7.157
Granular dentate gyrus 18.832
CA1 - oriens layer 3.269
CA1 - pyramidal layer 26.350
CA1 - radiatum layer 6.003
CA2 - oriens layer 4.199
CA2 - pyramidal layer 18.216
CA2 - radiatum layer 4.070
CA3 - oriens layer 1.357
CA3 - pyramidal layer 16.034
CA3 - radiatum layer 5.873
Stratum lucidum 11.449
Lacunosum moleculare 4.797
Subiculum 13.606

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Hippocampus
nTPM: 3.1
1898 Male, age 80, left hemisphere 11.3
2621 Female, age 67, right hemisphere 6.0
2148 Female, age 91, left hemisphere 1.6
1855 Male, age 76, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 6.9
1927 Female, age 91, both hemispheres 19.3
2246 Female, age 85, both hemispheres 7.3
2531 Female, age 67, both hemispheres 5.6
2528 Male, age 74, both hemispheres 5.4
2530 Female, age 94, left hemisphere 3.9
2010 Male, age 76, both hemispheres 0.0
Entorhinal gyrus
nTPM: 14.4
2613 Female, age 94, left hemisphere 26.1
2764 Male, age 80, right hemisphere 21.7
1938 Female, age 85, left hemisphere 17.4
1787 Male, age 76, left hemisphere 13.3
2686 Male, age 75, right hemisphere 7.6
2117 Female, age 91, right hemisphere 0.4
Hippocampus, CA1
nTPM: 6.5
2749 Male, age 80, left hemisphere 18.5
2527 Male, age 74, both hemispheres 8.6
2082 Female, age 91, right hemisphere 2.7
1873 Female, age 85, both hemispheres 2.5
2045 Male, age 76, both hemispheres 0.0
Hippocampus, CA2
nTPM: 9.2
2437 Female, age 94, left hemisphere 19.3
1892 Male, age 76, both hemispheres 17.0
1940 Female, age 85, left hemisphere 9.6
1963 Male, age 80, left hemisphere 4.3
2113 Female, age 91, right hemisphere 2.6
2249 Male, age 74, both hemispheres 2.2
Hippocampus, CA3
nTPM: 6.0
1867 Male, age 76, both hemispheres 9.1
2137 Male, age 80, left hemisphere 8.8
2620 Female, age 94, left hemisphere 8.6
2436 Male, age 74, both hemispheres 4.3
1891 Female, age 85, both hemispheres 3.8
2861 Female, age 67, both hemispheres 1.6
Parahippocampal cortex
nTPM: 18.8
1990 Female, age 91, right hemisphere 34.2
2250 Female, age 67, right hemisphere 31.4
2245 Female, age 91, both hemispheres 26.4
1850 Male, age 80, both hemispheres 23.5
2693 Female, age 94, both hemispheres 23.2
1933 Female, age 85, both hemispheres 14.5
2622 Female, age 67, right hemisphere 13.6
2532 Female, age 72, left hemisphere 11.9
2692 Male, age 74, both hemispheres 6.7
2018 Male, age 76, both hemispheres 2.2
Perirhinal gyrus
nTPM: 31.8
1847 Female, age 91, left hemisphere 49.0
2521 Female, age 94, right hemisphere 40.3
1794 Male, age 80, right hemisphere 30.8
1841 Female, age 85, right hemisphere 27.1
2848 Male, age 76, right hemisphere 11.8
Subiculum
nTPM: 9.4
1977 Female, age 85, both hemispheres 18.3
2619 Male, age 74, both hemispheres 15.2
2438 Female, age 94, left hemisphere 14.4
1901 Male, age 80, both hemispheres 8.6
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.1
Samples: 197

Max nTPM: 139.7
Min nTPM: 0.8
Std nTPM: 29.0
Median nTPM: 33.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 139.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 126.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 113.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 113.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 111.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 105.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 104.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 104.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 102.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 99.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 99.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.7
FF:10169-103B7 60 years, female 105.6
FF:10153-102I9 76 years, female 61.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 114.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 87.7
Samples: 4

Max nTPM: 104.1
Min nTPM: 64.4
Sample A Female 94.9
Sample B Female 87.3
Sample C Male 104.1
Sample D Male 64.4
Entorhinal cortex
nTPM: 114.6
Samples: 4

Max nTPM: 123.4
Min nTPM: 111.0
Sample A Female 123.4
Sample B Female 112.5
Sample C Male 111.0
Sample D Male 111.5
Subiculum
nTPM: 109.9
Samples: 4

Max nTPM: 121.8
Min nTPM: 97.6
Sample A Female 121.8
Sample B Female 97.6
Sample C Male 109.4
Sample D Male 110.8
Ventral hippocampus
nTPM: 86.6
Samples: 4

Max nTPM: 99.5
Min nTPM: 70.2
Sample A Female 99.5
Sample B Female 70.2
Sample C Male 98.5
Sample D Male 78.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 91.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 91.6
Samples: 4

Max nTPM: 99.3
Min nTPM: 85.3
Sample A Male 90.2
Sample B Male 91.5
Sample C Female 85.3
Sample D Female 99.3
Hippocampal formation
nTPM: 92.0
Samples: 4

Max nTPM: 104.2
Min nTPM: 76.9
Sample A Male 76.9
Sample B Male 97.4
Sample C Female 104.2
Sample D Female 89.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
67765717 Antisense, RP_040916_01_E12, Mouse strain C57BL/6J (56 days, male) 24.0
71836833 Antisense, RP_051017_02_B08, Mouse strain C57BL/6J (56 days, male) 23.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.