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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:117.3 nTPM
HPA:117.3 nTPM
GTEx:88.9 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:51.7 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037603Antibody HPA037604
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 117.3
Sample id Sample description nTPM
Hippocampus
nTPM: 110.4
1898 Male, age 80, left hemisphere 115.3
2529 Female, age 94, left hemisphere 112.3
2621 Female, age 67, right hemisphere 111.1
1911 Female, age 85, right hemisphere 109.3
1855 Male, age 76, left hemisphere 108.4
2148 Female, age 91, left hemisphere 106.3
Dentate gyrus
nTPM: 111.5
1927 Female, age 91, both hemispheres 113.6
2528 Male, age 74, both hemispheres 113.5
2010 Male, age 76, both hemispheres 113.4
2530 Female, age 94, left hemisphere 111.5
2246 Female, age 85, both hemispheres 109.1
2531 Female, age 67, both hemispheres 108.1
Entorhinal gyrus
nTPM: 112.5
2764 Male, age 80, right hemisphere 118.5
2117 Female, age 91, right hemisphere 114.9
1938 Female, age 85, left hemisphere 113.5
1787 Male, age 76, left hemisphere 112.6
2686 Male, age 75, right hemisphere 108.9
2613 Female, age 94, left hemisphere 106.6
Hippocampus, CA1
nTPM: 113.5
2749 Male, age 80, left hemisphere 122.2
2082 Female, age 91, right hemisphere 113.5
2527 Male, age 74, both hemispheres 111.9
1873 Female, age 85, both hemispheres 110.0
2045 Male, age 76, both hemispheres 110.0
Hippocampus, CA2
nTPM: 113.9
2249 Male, age 74, both hemispheres 118.2
1892 Male, age 76, both hemispheres 117.9
1963 Male, age 80, left hemisphere 115.7
2113 Female, age 91, right hemisphere 111.4
2437 Female, age 94, left hemisphere 111.1
1940 Female, age 85, left hemisphere 109.0
Hippocampus, CA3
nTPM: 113.2
1867 Male, age 76, both hemispheres 121.1
2137 Male, age 80, left hemisphere 119.3
2436 Male, age 74, both hemispheres 113.5
1891 Female, age 85, both hemispheres 113.2
2620 Female, age 94, left hemisphere 107.9
2861 Female, age 67, both hemispheres 104.0
Parahippocampal cortex
nTPM: 112.8
1850 Male, age 80, both hemispheres 118.5
2018 Male, age 76, both hemispheres 117.2
1990 Female, age 91, right hemisphere 115.9
2532 Female, age 72, left hemisphere 114.1
1933 Female, age 85, both hemispheres 113.9
2250 Female, age 67, right hemisphere 113.8
2245 Female, age 91, both hemispheres 113.0
2693 Female, age 94, both hemispheres 111.4
2692 Male, age 74, both hemispheres 106.7
2622 Female, age 67, right hemisphere 103.4
Perirhinal gyrus
nTPM: 117.3
1794 Male, age 80, right hemisphere 120.8
1847 Female, age 91, left hemisphere 119.6
1841 Female, age 85, right hemisphere 117.9
2521 Female, age 94, right hemisphere 115.6
2848 Male, age 76, right hemisphere 112.8
Subiculum
nTPM: 114.3
1901 Male, age 80, both hemispheres 119.5
1977 Female, age 85, both hemispheres 116.9
2438 Female, age 94, left hemisphere 115.0
2042 Male, age 76, both hemispheres 113.8
2619 Male, age 74, both hemispheres 111.5
2729 Female, age 91, right hemisphere 109.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 88.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 88.9
Samples: 197

Max nTPM: 343.0
Min nTPM: 52.8
Std nTPM: 27.1
Median nTPM: 84.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 343.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 182.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 164.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 162.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 152.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 146.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 137.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 134.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 128.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 125.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 124.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.0
FF:10169-103B7 60 years, female 65.9
FF:10153-102I9 76 years, female 38.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.7
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.3
Sample A Female 0.4
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.3
Subiculum
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.5
Ventral hippocampus
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 46.6
Samples: 4

Max nTPM: 47.6
Min nTPM: 43.8
Sample A Male 47.2
Sample B Male 47.6
Sample C Female 43.8
Sample D Female 47.6
Hippocampal formation
nTPM: 51.7
Samples: 4

Max nTPM: 63.8
Min nTPM: 40.9
Sample A Male 40.9
Sample B Male 48.0
Sample C Female 63.8
Sample D Female 54.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
74511807 Antisense, RP_060220_03_B04, Mouse strain C57BL/6J (56 days, male) 1.5
71232779 Antisense, RP_050503_01_C10, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.