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PAMR1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:15.8 nTPM
FANTOM5:16.7 Scaled Tags Per Million
Pig:53.5 nTPM
Mouse:27.9 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Hippocampus
nTPM: 22.5
1855 Male, age 76, left hemisphere 23.7
1911 Female, age 85, right hemisphere 23.0
2148 Female, age 91, left hemisphere 23.0
2529 Female, age 94, left hemisphere 22.6
1898 Male, age 80, left hemisphere 22.5
2621 Female, age 67, right hemisphere 20.1
Dentate gyrus
nTPM: 21.0
2528 Male, age 74, both hemispheres 23.8
2010 Male, age 76, both hemispheres 22.4
2246 Female, age 85, both hemispheres 22.2
1927 Female, age 91, both hemispheres 21.0
2530 Female, age 94, left hemisphere 18.3
2531 Female, age 67, both hemispheres 18.0
Entorhinal gyrus
nTPM: 21.5
2117 Female, age 91, right hemisphere 26.3
1938 Female, age 85, left hemisphere 23.6
1787 Male, age 76, left hemisphere 21.7
2686 Male, age 75, right hemisphere 20.2
2764 Male, age 80, right hemisphere 18.9
2613 Female, age 94, left hemisphere 18.2
Hippocampus, CA1
nTPM: 21.9
2082 Female, age 91, right hemisphere 24.8
2527 Male, age 74, both hemispheres 23.9
2045 Male, age 76, both hemispheres 22.6
1873 Female, age 85, both hemispheres 21.7
2749 Male, age 80, left hemisphere 16.5
Hippocampus, CA2
nTPM: 22.1
1940 Female, age 85, left hemisphere 24.5
2113 Female, age 91, right hemisphere 24.4
2249 Male, age 74, both hemispheres 24.2
2437 Female, age 94, left hemisphere 20.0
1963 Male, age 80, left hemisphere 19.9
1892 Male, age 76, both hemispheres 19.4
Hippocampus, CA3
nTPM: 20.2
1891 Female, age 85, both hemispheres 21.3
2436 Male, age 74, both hemispheres 21.0
1867 Male, age 76, both hemispheres 20.8
2861 Female, age 67, both hemispheres 20.5
2620 Female, age 94, left hemisphere 19.1
2137 Male, age 80, left hemisphere 18.4
Parahippocampal cortex
nTPM: 21.9
1933 Female, age 85, both hemispheres 26.4
2692 Male, age 74, both hemispheres 25.4
2018 Male, age 76, both hemispheres 23.7
2622 Female, age 67, right hemisphere 22.4
2250 Female, age 67, right hemisphere 21.6
2245 Female, age 91, both hemispheres 20.9
1990 Female, age 91, right hemisphere 20.7
2693 Female, age 94, both hemispheres 20.1
1850 Male, age 80, both hemispheres 19.0
2532 Female, age 72, left hemisphere 18.8
Perirhinal gyrus
nTPM: 20.1
1841 Female, age 85, right hemisphere 21.3
1847 Female, age 91, left hemisphere 20.9
1794 Male, age 80, right hemisphere 20.5
2521 Female, age 94, right hemisphere 19.6
2848 Male, age 76, right hemisphere 18.1
Subiculum
nTPM: 22.4
2729 Female, age 91, right hemisphere 27.7
2619 Male, age 74, both hemispheres 25.9
1977 Female, age 85, both hemispheres 21.4
2042 Male, age 76, both hemispheres 20.6
1901 Male, age 80, both hemispheres 19.9
2438 Female, age 94, left hemisphere 18.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 15.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 15.8
Samples: 197

Max nTPM: 44.3
Min nTPM: 1.5
Std nTPM: 8.0
Median nTPM: 14.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 44.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 43.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 41.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 40.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 36.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 35.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 33.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 33.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 32.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 31.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 31.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.7
FF:10153-102I9 76 years, female 21.0
FF:10169-103B7 60 years, female 12.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 32.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 32.2
Sample C Male 36.2
Sample D Male 32.4
Entorhinal cortex
nTPM: 53.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 47.2
Sample A Female 47.2
Sample B Female 55.8
Sample C Male 63.5
Sample D Male 47.7
Subiculum
nTPM: 50.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 42.0
Sample A Female 63.2
Sample B Female 52.9
Sample C Male 42.0
Sample D Male 44.0
Ventral hippocampus
nTPM: 34.7
Samples: 4

Max nTPM: 45.3
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 38.6
Sample C Male 45.3
Sample D Male 30.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.9
Samples: 4

Max nTPM: 35.2
Min nTPM: 21.5
Sample A Male 26.7
Sample B Male 35.2
Sample C Female 21.5
Sample D Female 28.1
Hippocampal formation
nTPM: 8.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 4.3
Sample A Male 11.5
Sample B Male 7.0
Sample C Female 4.3
Sample D Female 10.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
76135459 Antisense, RP_060518_04_E11, Mouse strain C57BL/6J (56 days, male) 1.4
70744322 Antisense, RP_050725_02_B01, Mouse strain C57BL/6J (56 days, male) 1.1

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