ABOUTMENU
HELP
NEWS
CELF1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:44.8 nTPM
HPA:44.8 nTPM
GTEx:28.3 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:72.7 nTPM
Allen mouse:3.5 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB016114Antibody CAB069989
Glial cells HighLow
Neuronal cells HighHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.2
2846 Female, age 79, unknown 53.0
2290 Female, age 72, unknown 48.9
1857 Female, age 85, left hemisphere 47.5
1854 Male, age 80, left hemisphere 43.2
2289 Male, age 61, right hemisphere 40.9
1781 Male, age 74, unknown 36.8
2288 Male, age 75, left hemisphere 29.9
2481 Female, age 94, left hemisphere 29.4
Claustrum
nTPM: 31.9
2645 Female, age 72, unknown 35.6
2284 Female, age 91, both hemispheres 34.7
2568 Male, age 61, both hemispheres 33.7
2196 Female, age 79, unknown 32.4
2292 Female, age 85, both hemispheres 31.0
2198 Male, age 80, both hemispheres 30.8
2491 Male, age 75, both hemispheres 30.7
2392 Female, age 94, both hemispheres 30.6
1956 Male, age 74, unknown 28.1
Globus pallidus, externus
nTPM: 21.6
2395 Male, age 75, both hemispheres 27.4
2567 Female, age 72, unknown 24.5
2646 Male, age 61, right hemisphere 22.4
1996 Male, age 80, right hemisphere 18.6
2772 Female, age 79, unknown 15.0
Globus pallidus, internus
nTPM: 20.6
2483 Female, age 94, right hemisphere 28.0
2287 Male, age 75, right hemisphere 22.4
2111 Female, age 85, right hemisphere 19.6
1818 Male, age 74, unknown 19.1
2037 Male, age 80, right hemisphere 18.6
2566 Female, age 72, unknown 18.6
2778 Female, age 91, both hemispheres 18.3
Nucleus accumbens
nTPM: 38.5
2824 Male, age 61, right hemisphere 51.8
1783 Male, age 74, unknown 49.1
1856 Female, age 91, right hemisphere 44.7
1806 Female, age 85, left hemisphere 43.3
2698 Female, age 72, unknown 37.8
2286 Male, age 75, left hemisphere 28.5
2732 Male, age 80, right hemisphere 26.6
2391 Female, age 94, left hemisphere 26.2
Nucleus basalis of Meynert
nTPM: 31.9
2393 Male, age 80, right hemisphere 43.1
2484 Female, age 94, left hemisphere 33.5
2821 Male, age 75, both hemispheres 26.5
2569 Male, age 61, both hemispheres 24.3
Nucleus of the diagonal band
nTPM: 31.5
2195 Female, age 85, both hemispheres 36.9
2775 Male, age 80, right hemisphere 31.2
1812 Female, age 91, both hemispheres 30.6
2029 Male, age 61, right hemisphere 29.7
1979 Male, age 74, unknown 29.2
Olfactory tubercle
nTPM: 31.0
1998 Female, age 91, both hemispheres 32.8
2487 Female, age 94, left hemisphere 32.3
1846 Male, age 80, right hemisphere 29.6
2856 Male, age 75, right hemisphere 29.1
Putamen
nTPM: 44.8
2466 Female, age 79, unknown 56.6
1838 Male, age 80, right hemisphere 55.3
1829 Male, age 74, unknown 52.1
2489 Female, age 72, unknown 48.2
1937 Female, age 91, right hemisphere 41.6
2647 Male, age 75, left hemisphere 32.1
2482 Female, age 94, left hemisphere 27.9
Septal nuclei
nTPM: 29.5
1960 Male, age 74, unknown 34.0
2031 Female, age 72, unknown 31.5
2009 Female, age 91, both hemispheres 31.2
2629 Female, age 94, right hemisphere 30.9
2059 Female, age 85, both hemispheres 29.0
2199 Male, age 80, right hemisphere 27.0
2394 Male, age 61, left hemisphere 22.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.7
Samples: 246

Max nTPM: 42.5
Min nTPM: 14.1
Std nTPM: 4.5
Median nTPM: 25.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 42.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 37.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 36.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 35.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 35.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 35.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 34.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 34.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 51.4
Min nTPM: 14.0
Std nTPM: 6.1
Median nTPM: 28.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 51.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 48.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 48.1
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 42.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 41.7
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 41.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 40.7
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 40.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 39.8
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 39.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 38.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 44.1
Min nTPM: 15.2
Std nTPM: 5.0
Median nTPM: 24.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 42.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 38.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 37.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 37.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 35.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 34.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 33.6
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 33.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 32.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.9
FF:10164-103B2 76 years, female 80.9
Globus pallidus
Scaled Tags Per Million: 60.0
FF:10175-103C4 60 years, female 68.6
FF:10161-103A8 76 years, female 51.4
Nucleus accumbens
Scaled Tags Per Million: 73.3
FF:10037-101F1 23-56 years, mixed 73.3
Putamen
Scaled Tags Per Million: 89.2
FF:10176-103C5 60 years, female 89.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Caudate
nTPM: 52.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 52.3
Sample C Male 57.6
Sample D Male 50.3
Putamen
nTPM: 48.9
Samples: 4

Max nTPM: 59.6
Min nTPM: 36.7
Sample A Female 36.7
Sample B Female 48.3
Sample C Male 59.6
Sample D Male 50.8
Septum
nTPM: 40.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 31.3
Sample A Female 51.4
Sample B Female 48.0
Sample C Male 32.1
Sample D Male 31.3
Ventral pallidum
nTPM: 48.1
Samples: 4

Max nTPM: 54.9
Min nTPM: 34.6
Sample A Female 54.9
Sample B Female 53.4
Sample C Male 34.6
Sample D Male 49.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.7
Samples: 4

Max nTPM: 76.5
Min nTPM: 69.5
Sample A Male 69.5
Sample B Male 71.8
Sample C Female 76.5
Sample D Female 73.1
Septum
nTPM: 48.8
Samples: 4

Max nTPM: 52.7
Min nTPM: 43.7
Sample A Male 50.8
Sample B Male 48.1
Sample C Female 43.7
Sample D Female 52.7
Ventral forebrain
nTPM: 57.1
Samples: 4

Max nTPM: 60.8
Min nTPM: 55.1
Sample A Male 56.1
Sample B Male 56.3
Sample C Female 55.1
Sample D Female 60.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
556983 Antisense, RP_040825_02_G04, Mouse strain C57BL/6J (56 days, male) 7.0
631727 Antisense, RP_040907_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.1
556983 Antisense, RP_040825_02_G04, Mouse strain C57BL/6J (56 days, male) 2.1
631727 Antisense, RP_040907_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.