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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA:28.2 nTPM
GTEx:23.0 nTPM
FANTOM5:65.1 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:37.7 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.0
1781 Male, age 74, unknown 29.4
2481 Female, age 94, left hemisphere 27.7
1854 Male, age 80, left hemisphere 27.4
2290 Female, age 72, unknown 27.4
1857 Female, age 85, left hemisphere 27.3
2289 Male, age 61, right hemisphere 27.0
2846 Female, age 79, unknown 26.4
2288 Male, age 75, left hemisphere 23.2
Claustrum
nTPM: 25.9
1956 Male, age 74, unknown 26.9
2196 Female, age 79, unknown 26.8
2292 Female, age 85, both hemispheres 26.5
2198 Male, age 80, both hemispheres 26.4
2392 Female, age 94, both hemispheres 26.2
2568 Male, age 61, both hemispheres 25.8
2645 Female, age 72, unknown 25.5
2284 Female, age 91, both hemispheres 25.0
2491 Male, age 75, both hemispheres 23.8
Globus pallidus, externus
nTPM: 27.2
1996 Male, age 80, right hemisphere 31.2
2772 Female, age 79, unknown 27.8
2567 Female, age 72, unknown 26.4
2646 Male, age 61, right hemisphere 26.3
2395 Male, age 75, both hemispheres 24.4
Globus pallidus, internus
nTPM: 28.2
2037 Male, age 80, right hemisphere 29.5
2778 Female, age 91, both hemispheres 29.4
2287 Male, age 75, right hemisphere 28.6
2566 Female, age 72, unknown 28.2
2111 Female, age 85, right hemisphere 27.8
2483 Female, age 94, right hemisphere 27.2
1818 Male, age 74, unknown 26.6
Nucleus accumbens
nTPM: 26.1
2732 Male, age 80, right hemisphere 27.5
2698 Female, age 72, unknown 27.4
2391 Female, age 94, left hemisphere 27.1
1806 Female, age 85, left hemisphere 26.4
1783 Male, age 74, unknown 26.3
1856 Female, age 91, right hemisphere 25.2
2824 Male, age 61, right hemisphere 24.5
2286 Male, age 75, left hemisphere 23.9
Nucleus basalis of Meynert
nTPM: 25.2
2569 Male, age 61, both hemispheres 26.9
2393 Male, age 80, right hemisphere 26.0
2484 Female, age 94, left hemisphere 25.5
2821 Male, age 75, both hemispheres 22.3
Nucleus of the diagonal band
nTPM: 26.4
2775 Male, age 80, right hemisphere 26.9
2195 Female, age 85, both hemispheres 26.7
2029 Male, age 61, right hemisphere 26.5
1979 Male, age 74, unknown 26.3
1812 Female, age 91, both hemispheres 25.5
Olfactory tubercle
nTPM: 26.9
2856 Male, age 75, right hemisphere 29.3
1846 Male, age 80, right hemisphere 26.8
2487 Female, age 94, left hemisphere 26.8
1998 Female, age 91, both hemispheres 24.8
Putamen
nTPM: 25.6
1829 Male, age 74, unknown 26.6
2482 Female, age 94, left hemisphere 26.6
2466 Female, age 79, unknown 26.1
2489 Female, age 72, unknown 25.9
1838 Male, age 80, right hemisphere 25.6
1937 Female, age 91, right hemisphere 24.9
2647 Male, age 75, left hemisphere 23.2
Septal nuclei
nTPM: 26.7
1960 Male, age 74, unknown 27.7
2031 Female, age 72, unknown 27.5
2394 Male, age 61, left hemisphere 27.2
2059 Female, age 85, both hemispheres 26.8
2199 Male, age 80, right hemisphere 26.5
2629 Female, age 94, right hemisphere 26.2
2009 Female, age 91, both hemispheres 24.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.0
Samples: 246

Max nTPM: 71.4
Min nTPM: 14.7
Std nTPM: 6.8
Median nTPM: 20.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 71.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 51.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 47.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 46.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 43.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 41.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 40.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 40.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 36.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.0
Samples: 246

Max nTPM: 72.2
Min nTPM: 14.6
Std nTPM: 7.3
Median nTPM: 21.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 72.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 55.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 52.5
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 51.3
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 50.5
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 49.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 48.3
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 46.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 44.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 42.1
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 40.3
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Brain - Putamen (basal ganglia)
Average nTPM: 22.3
Samples: 205

Max nTPM: 64.7
Min nTPM: 14.7
Std nTPM: 6.7
Median nTPM: 20.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 64.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 59.0
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 52.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 49.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 49.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 45.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 37.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 36.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 34.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 34.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 34.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 57.1
FF:10164-103B2 76 years, female 57.1
Globus pallidus
Scaled Tags Per Million: 59.7
FF:10161-103A8 76 years, female 64.3
FF:10175-103C4 60 years, female 55.2
Nucleus accumbens
Scaled Tags Per Million: 57.2
FF:10037-101F1 23-56 years, mixed 57.2
Putamen
Scaled Tags Per Million: 65.1
FF:10176-103C5 60 years, female 65.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 7.8
Sample C Male 8.3
Sample D Male 6.7
Putamen
nTPM: 7.8
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.6
Sample A Female 8.2
Sample B Female 6.6
Sample C Male 7.9
Sample D Male 8.6
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.0
Sample A Female 7.4
Sample B Female 7.6
Sample C Male 8.3
Sample D Male 6.0
Ventral pallidum
nTPM: 8.2
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 8.3
Sample C Male 10.1
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.7
Samples: 4

Max nTPM: 36.7
Min nTPM: 34.0
Sample A Male 36.7
Sample B Male 34.0
Sample C Female 35.6
Sample D Female 36.6
Septum
nTPM: 32.2
Samples: 4

Max nTPM: 35.1
Min nTPM: 30.0
Sample A Male 30.0
Sample B Male 31.2
Sample C Female 35.1
Sample D Female 32.3
Ventral forebrain
nTPM: 37.7
Samples: 4

Max nTPM: 38.4
Min nTPM: 37.2
Sample A Male 37.2
Sample B Male 38.1
Sample C Female 37.2
Sample D Female 38.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69835624 Antisense, RP_050215_02_B08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
69835624 Antisense, RP_050215_02_B08, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.