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VPS51
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:30.0 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:31.8 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039650
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Hippocampus
nTPM: 19.6
2529 Female, age 94, left hemisphere 27.7
2148 Female, age 91, left hemisphere 19.4
2621 Female, age 67, right hemisphere 19.1
1911 Female, age 85, right hemisphere 18.3
1898 Male, age 80, left hemisphere 17.9
1855 Male, age 76, left hemisphere 15.4
Dentate gyrus
nTPM: 19.3
2531 Female, age 67, both hemispheres 24.5
2530 Female, age 94, left hemisphere 21.9
2246 Female, age 85, both hemispheres 18.9
2010 Male, age 76, both hemispheres 18.1
1927 Female, age 91, both hemispheres 16.4
2528 Male, age 74, both hemispheres 15.6
Entorhinal gyrus
nTPM: 20.7
1787 Male, age 76, left hemisphere 23.6
2613 Female, age 94, left hemisphere 22.9
2764 Male, age 80, right hemisphere 21.4
2686 Male, age 75, right hemisphere 19.0
1938 Female, age 85, left hemisphere 18.9
2117 Female, age 91, right hemisphere 18.4
Hippocampus, CA1
nTPM: 20.4
2749 Male, age 80, left hemisphere 28.4
2082 Female, age 91, right hemisphere 21.7
2527 Male, age 74, both hemispheres 20.9
1873 Female, age 85, both hemispheres 15.8
2045 Male, age 76, both hemispheres 15.3
Hippocampus, CA2
nTPM: 18.8
2113 Female, age 91, right hemisphere 22.9
2437 Female, age 94, left hemisphere 21.9
1963 Male, age 80, left hemisphere 19.6
1892 Male, age 76, both hemispheres 17.3
1940 Female, age 85, left hemisphere 16.7
2249 Male, age 74, both hemispheres 14.7
Hippocampus, CA3
nTPM: 22.5
2137 Male, age 80, left hemisphere 28.5
2861 Female, age 67, both hemispheres 25.9
2620 Female, age 94, left hemisphere 25.5
2436 Male, age 74, both hemispheres 22.5
1867 Male, age 76, both hemispheres 16.8
1891 Female, age 85, both hemispheres 16.0
Parahippocampal cortex
nTPM: 17.2
2245 Female, age 91, both hemispheres 23.2
1850 Male, age 80, both hemispheres 21.6
1990 Female, age 91, right hemisphere 19.3
2692 Male, age 74, both hemispheres 18.0
2532 Female, age 72, left hemisphere 16.2
1933 Female, age 85, both hemispheres 16.0
2622 Female, age 67, right hemisphere 14.7
2693 Female, age 94, both hemispheres 14.6
2250 Female, age 67, right hemisphere 14.3
2018 Male, age 76, both hemispheres 14.1
Perirhinal gyrus
nTPM: 20.1
1794 Male, age 80, right hemisphere 28.0
1847 Female, age 91, left hemisphere 22.7
2521 Female, age 94, right hemisphere 18.0
2848 Male, age 76, right hemisphere 16.5
1841 Female, age 85, right hemisphere 15.2
Subiculum
nTPM: 19.2
2438 Female, age 94, left hemisphere 22.5
1901 Male, age 80, both hemispheres 22.3
1977 Female, age 85, both hemispheres 19.4
2042 Male, age 76, both hemispheres 18.2
2619 Male, age 74, both hemispheres 17.6
2729 Female, age 91, right hemisphere 15.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.0
Samples: 197

Max nTPM: 64.2
Min nTPM: 12.5
Std nTPM: 10.1
Median nTPM: 27.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 64.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 58.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 57.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 56.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 56.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 56.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 54.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 53.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 52.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 50.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 49.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.8
FF:10169-103B7 60 years, female 76.3
FF:10153-102I9 76 years, female 63.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 35.6
Min nTPM: 17.8
Sample A Female 35.6
Sample B Female 29.0
Sample C Male 20.9
Sample D Male 17.8
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 24.7
Min nTPM: 16.9
Sample A Female 21.9
Sample B Female 22.2
Sample C Male 24.7
Sample D Male 16.9
Subiculum
nTPM: 21.3
Samples: 4

Max nTPM: 26.8
Min nTPM: 18.0
Sample A Female 26.8
Sample B Female 19.9
Sample C Male 20.5
Sample D Male 18.0
Ventral hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 18.0
Sample A Female 23.4
Sample B Female 18.0
Sample C Male 31.3
Sample D Male 29.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 26.5
Sample A Male 26.5
Sample B Male 29.0
Sample C Female 30.6
Sample D Female 28.5
Hippocampal formation
nTPM: 31.8
Samples: 4

Max nTPM: 33.5
Min nTPM: 28.9
Sample A Male 33.5
Sample B Male 31.6
Sample C Female 28.9
Sample D Female 33.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
72081738 Antisense, RP_051019_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1
71147765 Antisense, RP_050719_02_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.