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CNKSR2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA:12.2 nTPM
GTEx:24.2 nTPM
FANTOM5:182.8 Scaled Tags Per Million
Pig:49.7 nTPM
Mouse:114.3 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.3
1857 Female, age 85, left hemisphere 13.2
1854 Male, age 80, left hemisphere 12.2
1781 Male, age 74, unknown 8.4
2846 Female, age 79, unknown 8.4
2290 Female, age 72, unknown 7.7
2289 Male, age 61, right hemisphere 4.0
2288 Male, age 75, left hemisphere 2.9
2481 Female, age 94, left hemisphere 1.6
Claustrum
nTPM: 6.0
2491 Male, age 75, both hemispheres 10.1
2392 Female, age 94, both hemispheres 9.0
2198 Male, age 80, both hemispheres 7.6
1956 Male, age 74, unknown 7.5
2284 Female, age 91, both hemispheres 6.7
2568 Male, age 61, both hemispheres 6.5
2196 Female, age 79, unknown 4.4
2645 Female, age 72, unknown 2.3
2292 Female, age 85, both hemispheres 0.3
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 8.3
1856 Female, age 91, right hemisphere 25.7
2824 Male, age 61, right hemisphere 11.2
1783 Male, age 74, unknown 11.1
1806 Female, age 85, left hemisphere 10.2
2698 Female, age 72, unknown 5.2
2286 Male, age 75, left hemisphere 3.5
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.5
2393 Male, age 80, right hemisphere 8.9
2484 Female, age 94, left hemisphere 1.4
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 12.2
2029 Male, age 61, right hemisphere 15.8
2775 Male, age 80, right hemisphere 15.2
2195 Female, age 85, both hemispheres 15.0
1812 Female, age 91, both hemispheres 14.9
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 11.8
1846 Male, age 80, right hemisphere 14.9
2487 Female, age 94, left hemisphere 12.3
1998 Female, age 91, both hemispheres 10.2
2856 Male, age 75, right hemisphere 9.8
Putamen
nTPM: 8.5
1838 Male, age 80, right hemisphere 19.8
1937 Female, age 91, right hemisphere 19.5
1829 Male, age 74, unknown 9.7
2466 Female, age 79, unknown 8.9
2489 Female, age 72, unknown 1.9
2482 Female, age 94, left hemisphere 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 8.1
1960 Male, age 74, unknown 17.9
2031 Female, age 72, unknown 15.4
2629 Female, age 94, right hemisphere 11.0
2009 Female, age 91, both hemispheres 7.9
2059 Female, age 85, both hemispheres 4.4
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.0
Samples: 246

Max nTPM: 74.2
Min nTPM: 2.1
Std nTPM: 12.5
Median nTPM: 20.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 74.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 54.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 53.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 53.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 46.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 45.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 44.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 44.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 43.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 43.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.2
Samples: 246

Max nTPM: 59.4
Min nTPM: 2.0
Std nTPM: 13.1
Median nTPM: 24.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 59.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 57.7
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 52.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 50.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 49.4
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 49.4
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 48.4
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 47.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 47.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 46.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 46.4
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Brain - Putamen (basal ganglia)
Average nTPM: 18.1
Samples: 205

Max nTPM: 51.8
Min nTPM: 2.0
Std nTPM: 11.3
Median nTPM: 16.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 51.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 50.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 43.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 41.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 41.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 40.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 39.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 39.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 37.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 182.8
FF:10164-103B2 76 years, female 182.8
Globus pallidus
Scaled Tags Per Million: 52.3
FF:10175-103C4 60 years, female 83.6
FF:10161-103A8 76 years, female 20.9
Nucleus accumbens
Scaled Tags Per Million: 99.7
FF:10037-101F1 23-56 years, mixed 99.7
Putamen
Scaled Tags Per Million: 119.8
FF:10176-103C5 60 years, female 119.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.7
Pig sample Sample description nTPM
Caudate
nTPM: 46.0
Samples: 4

Max nTPM: 53.1
Min nTPM: 41.6
Sample A Female 41.6
Sample B Female 43.8
Sample C Male 53.1
Sample D Male 45.5
Putamen
nTPM: 49.7
Samples: 4

Max nTPM: 71.5
Min nTPM: 24.7
Sample A Female 24.7
Sample B Female 52.5
Sample C Male 71.5
Sample D Male 50.0
Septum
nTPM: 25.6
Samples: 4

Max nTPM: 37.9
Min nTPM: 9.8
Sample A Female 37.9
Sample B Female 35.7
Sample C Male 9.8
Sample D Male 19.0
Ventral pallidum
nTPM: 36.0
Samples: 4

Max nTPM: 49.3
Min nTPM: 16.2
Sample A Female 49.3
Sample B Female 40.6
Sample C Male 16.2
Sample D Male 38.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 114.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 114.3
Samples: 4

Max nTPM: 120.6
Min nTPM: 107.2
Sample A Male 117.2
Sample B Male 107.2
Sample C Female 112.1
Sample D Female 120.6
Septum
nTPM: 33.0
Samples: 4

Max nTPM: 44.9
Min nTPM: 25.6
Sample A Male 44.9
Sample B Male 29.0
Sample C Female 32.6
Sample D Female 25.6
Ventral forebrain
nTPM: 86.1
Samples: 4

Max nTPM: 90.5
Min nTPM: 81.8
Sample A Male 90.5
Sample B Male 81.8
Sample C Female 82.1
Sample D Female 89.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74431564 Antisense, RP_060207_02_B06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
74431564 Antisense, RP_060207_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.