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CWC15
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:33.6 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:112.7 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039878
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Hippocampus
nTPM: 36.0
2529 Female, age 94, left hemisphere 37.3
1898 Male, age 80, left hemisphere 36.2
1855 Male, age 76, left hemisphere 35.9
2621 Female, age 67, right hemisphere 35.9
1911 Female, age 85, right hemisphere 35.7
2148 Female, age 91, left hemisphere 35.3
Dentate gyrus
nTPM: 35.5
2528 Male, age 74, both hemispheres 36.6
1927 Female, age 91, both hemispheres 36.3
2246 Female, age 85, both hemispheres 35.6
2010 Male, age 76, both hemispheres 35.2
2530 Female, age 94, left hemisphere 35.2
2531 Female, age 67, both hemispheres 34.0
Entorhinal gyrus
nTPM: 36.0
1938 Female, age 85, left hemisphere 38.2
2764 Male, age 80, right hemisphere 36.5
2117 Female, age 91, right hemisphere 35.7
1787 Male, age 76, left hemisphere 35.5
2613 Female, age 94, left hemisphere 35.0
2686 Male, age 75, right hemisphere 34.8
Hippocampus, CA1
nTPM: 36.1
2749 Male, age 80, left hemisphere 37.3
2527 Male, age 74, both hemispheres 37.0
1873 Female, age 85, both hemispheres 36.8
2082 Female, age 91, right hemisphere 34.8
2045 Male, age 76, both hemispheres 34.4
Hippocampus, CA2
nTPM: 36.2
1892 Male, age 76, both hemispheres 36.5
2249 Male, age 74, both hemispheres 36.5
2437 Female, age 94, left hemisphere 36.3
1963 Male, age 80, left hemisphere 36.1
2113 Female, age 91, right hemisphere 36.1
1940 Female, age 85, left hemisphere 35.7
Hippocampus, CA3
nTPM: 35.4
1891 Female, age 85, both hemispheres 36.6
1867 Male, age 76, both hemispheres 36.0
2137 Male, age 80, left hemisphere 36.0
2436 Male, age 74, both hemispheres 35.4
2620 Female, age 94, left hemisphere 34.5
2861 Female, age 67, both hemispheres 34.0
Parahippocampal cortex
nTPM: 36.2
1850 Male, age 80, both hemispheres 38.2
1933 Female, age 85, both hemispheres 37.2
2250 Female, age 67, right hemisphere 37.0
2245 Female, age 91, both hemispheres 36.5
2692 Male, age 74, both hemispheres 36.3
1990 Female, age 91, right hemisphere 36.0
2532 Female, age 72, left hemisphere 35.9
2693 Female, age 94, both hemispheres 35.7
2018 Male, age 76, both hemispheres 35.2
2622 Female, age 67, right hemisphere 33.8
Perirhinal gyrus
nTPM: 37.1
1794 Male, age 80, right hemisphere 37.9
1847 Female, age 91, left hemisphere 37.9
1841 Female, age 85, right hemisphere 37.6
2848 Male, age 76, right hemisphere 36.5
2521 Female, age 94, right hemisphere 35.7
Subiculum
nTPM: 36.4
2438 Female, age 94, left hemisphere 38.8
1901 Male, age 80, both hemispheres 37.2
1977 Female, age 85, both hemispheres 36.4
2619 Male, age 74, both hemispheres 35.7
2729 Female, age 91, right hemisphere 35.4
2042 Male, age 76, both hemispheres 34.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.6
Samples: 197

Max nTPM: 88.0
Min nTPM: 21.7
Std nTPM: 7.0
Median nTPM: 32.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 88.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 55.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 52.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 52.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 48.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 46.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 46.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 45.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 45.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 44.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 44.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.2
FF:10153-102I9 76 years, female 88.0
FF:10169-103B7 60 years, female 76.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 58.1
Samples: 4

Max nTPM: 75.2
Min nTPM: 45.9
Sample A Female 75.2
Sample B Female 50.9
Sample C Male 60.5
Sample D Male 45.9
Entorhinal cortex
nTPM: 50.0
Samples: 4

Max nTPM: 63.4
Min nTPM: 40.6
Sample A Female 50.8
Sample B Female 63.4
Sample C Male 45.0
Sample D Male 40.6
Subiculum
nTPM: 44.3
Samples: 4

Max nTPM: 60.3
Min nTPM: 37.6
Sample A Female 60.3
Sample B Female 38.9
Sample C Male 37.6
Sample D Male 40.3
Ventral hippocampus
nTPM: 46.9
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.2
Sample A Female 49.3
Sample B Female 38.2
Sample C Male 45.6
Sample D Male 54.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 112.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.0
Samples: 4

Max nTPM: 118.4
Min nTPM: 95.8
Sample A Male 103.2
Sample B Male 106.7
Sample C Female 118.4
Sample D Female 95.8
Hippocampal formation
nTPM: 112.7
Samples: 4

Max nTPM: 118.1
Min nTPM: 106.4
Sample A Male 118.1
Sample B Male 106.4
Sample C Female 114.6
Sample D Female 111.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
633672 Antisense, RP_040907_02_A03, Mouse strain C57BL/6J (56 days, male) 0.0

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