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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.8 nTPM
HPA:51.8 nTPM
GTEx:36.5 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:14.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
2586 Male, age 75, left hemisphere 44.9
1830 Male, age 51, unknown 44.2
1833 Male, age 53, unknown 44.2
2666 Male, age 74, left hemisphere 42.8
2828 Female, age 72, unknown 42.8
1870 Female, age 42, unknown 40.4
2019 Male, age 18, unknown 40.3
2411 Female, age 72, unknown 40.0
2219 Male, age 76, both hemispheres 35.2
1827 Male, age 72, unknown 34.2
Dorsal raphe nucleus
nTPM: 35.2
2750 Male, age 76, both hemispheres 46.2
2016 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 33.8
2047 Male, age 72, unknown 31.2
2298 Female, age 72, unknown 25.2
Inferior colliculus
nTPM: 34.8
1890 Male, age 53, unknown 37.1
2849 Male, age 72, unknown 36.9
1848 Female, age 42, unknown 36.3
2097 Female, age 72, unknown 29.1
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Pedunculopontine tegmental nucleus
nTPM: 36.2
2334 Male, age 80, both hemispheres 38.9
2338 Male, age 61, both hemispheres 36.7
1921 Female, age 85, both hemispheres 32.9
Periaquaductal grey, anterior
nTPM: 32.0
2502 Female, age 75, unknown 36.0
1947 Male, age 18, unknown 31.0
1795 Male, age 51, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 31.4
2464 Female, age 72, unknown 37.6
1831 Male, age 72, unknown 30.7
1840 Male, age 53, unknown 29.8
2850 Male, age 76, both hemispheres 27.5
Periaquaductal grey, lateral
nTPM: 29.6
2053 Male, age 18, unknown 34.3
2140 Male, age 76, both hemispheres 28.0
2272 Male, age 74, both hemispheres 26.4
Pretectal area
nTPM: 31.1
2316 Male, age 76, right hemisphere 40.2
1815 Male, age 53, unknown 37.6
1817 Female, age 42, unknown 33.8
2407 Male, age 75, both hemispheres 33.7
2825 Male, age 18, unknown 32.9
2007 Male, age 72, unknown 30.3
2667 Female, age 75, unknown 28.7
2224 Female, age 72, unknown 27.8
1944 Female, age 72, unknown 26.4
1816 Male, age 51, unknown 26.1
2273 Male, age 74, both hemispheres 25.1
Red nucleus
nTPM: 51.8
2823 Male, age 76, right hemisphere 63.7
2503 Female, age 72, unknown 56.2
1865 Male, age 51, unknown 56.1
1904 Male, age 53, unknown 55.3
2769 Male, age 72, unknown 54.2
2227 Male, age 72, unknown 53.8
2588 Male, age 74, left hemisphere 53.3
1821 Female, age 72, unknown 51.8
1954 Female, age 42, unknown 50.9
2785 Male, age 18, unknown 45.0
2725 Female, age 75, unknown 43.5
2584 Male, age 75, left hemisphere 37.6
Substantia nigra
nTPM: 35.1
2699 Male, age 18, unknown 42.1
2409 Female, age 72, unknown 39.6
2590 Female, age 75, unknown 36.6
2665 Male, age 74, both hemispheres 36.1
1851 Male, age 51, unknown 36.0
1889 Female, age 72, unknown 34.3
2583 Male, age 75, right hemisphere 34.2
2241 Male, age 72, unknown 33.8
1916 Female, age 42, unknown 30.1
1941 Male, age 53, unknown 28.5
Superior colliculus
nTPM: 36.4
1895 Male, age 76, right hemisphere 45.6
1995 Male, age 72, unknown 42.8
1913 Female, age 42, unknown 41.0
2668 Female, age 75, unknown 38.2
2587 Male, age 74, left hemisphere 37.6
1839 Male, age 51, unknown 37.2
2664 Male, age 75, both hemispheres 33.3
1796 Male, age 53, unknown 31.0
2087 Female, age 72, unknown 29.2
2261 Male, age 18, unknown 28.1
Ventral tegmental area
nTPM: 34.2
2410 Female, age 72, unknown 38.5
2223 Female, age 72, unknown 35.8
1942 Male, age 51, unknown 35.1
2021 Male, age 53, unknown 33.9
1915 Female, age 42, unknown 32.1
2218 Male, age 76, both hemispheres 29.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.5
Samples: 139

Max nTPM: 67.1
Min nTPM: 12.4
Std nTPM: 12.5
Median nTPM: 34.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 67.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 66.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 65.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 64.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 63.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 61.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 61.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 59.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 59.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 22.2
Sample A Female 35.1
Sample B Female 25.9
Sample C Male 22.2
Sample D Male 26.4
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 24.7
Min nTPM: 19.0
Sample B Female 24.7
Sample C Male 21.9
Sample D Male 19.0
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 34.2
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 26.9
Sample C Male 26.1
Sample D Male 34.2
Superior colliculi
nTPM: 24.5
Samples: 4

Max nTPM: 28.4
Min nTPM: 20.5
Sample A Female 28.4
Sample B Female 20.5
Sample C Male 22.6
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.9
Sample A Male 13.8
Sample B Male 16.0
Sample C Female 13.4
Sample D Female 12.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
100144855 Antisense, RP_110519_02_A12, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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