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FAM177A1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.6 nTPM
HPA:50.6 nTPM
GTEx:75.0 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:30.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.5
2411 Female, age 72, unknown 47.7
1833 Male, age 53, unknown 47.1
1830 Male, age 51, unknown 46.5
1870 Female, age 42, unknown 46.4
2666 Male, age 74, left hemisphere 44.3
2019 Male, age 18, unknown 40.9
1827 Male, age 72, unknown 39.6
2219 Male, age 76, both hemispheres 39.0
2586 Male, age 75, left hemisphere 38.3
2828 Female, age 72, unknown 35.0
Dorsal raphe nucleus
nTPM: 42.3
2750 Male, age 76, both hemispheres 49.0
2047 Male, age 72, unknown 45.6
1828 Male, age 53, unknown 41.9
2016 Female, age 72, unknown 38.4
2298 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 35.2
1848 Female, age 42, unknown 35.9
2849 Male, age 72, unknown 35.6
1890 Male, age 53, unknown 35.4
2097 Female, age 72, unknown 33.8
Median raphe nucleus
nTPM: 50.6
2220 Male, age 76, midline 50.6
Pedunculopontine tegmental nucleus
nTPM: 47.6
2338 Male, age 61, both hemispheres 52.1
2334 Male, age 80, both hemispheres 46.8
1921 Female, age 85, both hemispheres 43.8
Periaquaductal grey, anterior
nTPM: 37.0
1947 Male, age 18, unknown 43.6
2502 Female, age 75, unknown 34.1
1795 Male, age 51, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 35.7
2464 Female, age 72, unknown 37.3
2850 Male, age 76, both hemispheres 37.1
1831 Male, age 72, unknown 36.3
1840 Male, age 53, unknown 32.2
Periaquaductal grey, lateral
nTPM: 33.4
2053 Male, age 18, unknown 35.5
2272 Male, age 74, both hemispheres 32.7
2140 Male, age 76, both hemispheres 32.0
Pretectal area
nTPM: 37.5
1815 Male, age 53, unknown 41.7
2825 Male, age 18, unknown 41.1
2224 Female, age 72, unknown 39.2
1817 Female, age 42, unknown 38.6
2316 Male, age 76, right hemisphere 38.3
2407 Male, age 75, both hemispheres 38.0
2007 Male, age 72, unknown 36.3
1944 Female, age 72, unknown 36.0
2667 Female, age 75, unknown 35.4
2273 Male, age 74, both hemispheres 34.0
1816 Male, age 51, unknown 33.9
Red nucleus
nTPM: 46.9
2725 Female, age 75, unknown 51.9
1821 Female, age 72, unknown 51.8
2823 Male, age 76, right hemisphere 51.5
1865 Male, age 51, unknown 50.7
1954 Female, age 42, unknown 50.3
1904 Male, age 53, unknown 48.4
2503 Female, age 72, unknown 47.7
2588 Male, age 74, left hemisphere 44.3
2769 Male, age 72, unknown 43.2
2227 Male, age 72, unknown 42.9
2785 Male, age 18, unknown 40.0
2584 Male, age 75, left hemisphere 39.4
Substantia nigra
nTPM: 44.4
2241 Male, age 72, unknown 50.7
2409 Female, age 72, unknown 47.5
1851 Male, age 51, unknown 46.1
2699 Male, age 18, unknown 45.0
1916 Female, age 42, unknown 44.7
1941 Male, age 53, unknown 44.0
2590 Female, age 75, unknown 43.3
2665 Male, age 74, both hemispheres 42.2
1889 Female, age 72, unknown 40.4
2583 Male, age 75, right hemisphere 40.3
Superior colliculus
nTPM: 37.9
1913 Female, age 42, unknown 43.4
2587 Male, age 74, left hemisphere 42.9
1895 Male, age 76, right hemisphere 42.1
2668 Female, age 75, unknown 39.5
1839 Male, age 51, unknown 38.5
1995 Male, age 72, unknown 37.8
1796 Male, age 53, unknown 34.6
2664 Male, age 75, both hemispheres 34.2
2087 Female, age 72, unknown 33.6
2261 Male, age 18, unknown 31.9
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 46.7
2223 Female, age 72, unknown 46.5
2218 Male, age 76, both hemispheres 46.1
1915 Female, age 42, unknown 43.0
1942 Male, age 51, unknown 42.8
2021 Male, age 53, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.0
Samples: 139

Max nTPM: 132.3
Min nTPM: 37.6
Std nTPM: 16.9
Median nTPM: 74.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 132.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 124.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 123.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 112.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 112.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 111.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 110.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 108.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 104.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 102.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.9
FF:10158-103A5 76 years, female 104.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.9
Pig sample Sample description nTPM
Midbrain
nTPM: 26.6
Samples: 4

Max nTPM: 34.3
Min nTPM: 18.4
Sample A Female 30.2
Sample B Female 34.3
Sample C Male 18.4
Sample D Male 23.4
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 31.4
Min nTPM: 24.8
Sample B Female 31.4
Sample C Male 26.8
Sample D Male 24.8
Substantia nigra
nTPM: 32.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 23.2
Sample A Female 39.1
Sample B Female 23.2
Sample C Male 32.9
Sample D Male 36.3
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 31.8
Min nTPM: 16.3
Sample A Female 31.8
Sample B Female 16.3
Sample C Male 23.5
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 27.2
Sample A Male 27.2
Sample B Male 31.2
Sample C Female 32.1
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71280907 Antisense, RP_050818_01_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.