ABOUTMENU
HELP
NEWS
TEX9
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:4.2 nTPM
FANTOM5:27.7 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:2.7 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA039415
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
2289 Male, age 61, right hemisphere 6.3
1854 Male, age 80, left hemisphere 3.5
1857 Female, age 85, left hemisphere 3.3
2290 Female, age 72, unknown 2.8
2846 Female, age 79, unknown 2.7
2288 Male, age 75, left hemisphere 1.2
1781 Male, age 74, unknown 0.5
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 1.8
2568 Male, age 61, both hemispheres 3.1
2645 Female, age 72, unknown 3.1
2196 Female, age 79, unknown 2.5
2392 Female, age 94, both hemispheres 2.3
2491 Male, age 75, both hemispheres 2.0
2284 Female, age 91, both hemispheres 1.8
1956 Male, age 74, unknown 1.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.4
2646 Male, age 61, right hemisphere 1.4
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.8
2111 Female, age 85, right hemisphere 1.8
1818 Male, age 74, unknown 0.9
2037 Male, age 80, right hemisphere 0.9
2566 Female, age 72, unknown 0.8
2287 Male, age 75, right hemisphere 0.7
2778 Female, age 91, both hemispheres 0.2
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 3.8
2732 Male, age 80, right hemisphere 8.2
2824 Male, age 61, right hemisphere 6.6
1856 Female, age 91, right hemisphere 5.0
2698 Female, age 72, unknown 3.7
1806 Female, age 85, left hemisphere 2.9
1783 Male, age 74, unknown 1.9
2286 Male, age 75, left hemisphere 1.2
2391 Female, age 94, left hemisphere 0.8
Nucleus basalis of Meynert
nTPM: 1.4
2393 Male, age 80, right hemisphere 3.8
2484 Female, age 94, left hemisphere 0.7
2821 Male, age 75, both hemispheres 0.7
2569 Male, age 61, both hemispheres 0.4
Nucleus of the diagonal band
nTPM: 3.7
1979 Male, age 74, unknown 7.5
2195 Female, age 85, both hemispheres 4.2
2029 Male, age 61, right hemisphere 3.0
2775 Male, age 80, right hemisphere 2.6
1812 Female, age 91, both hemispheres 1.3
Olfactory tubercle
nTPM: 3.6
2487 Female, age 94, left hemisphere 4.5
2856 Male, age 75, right hemisphere 4.4
1846 Male, age 80, right hemisphere 3.1
1998 Female, age 91, both hemispheres 2.3
Putamen
nTPM: 1.9
1838 Male, age 80, right hemisphere 4.9
1937 Female, age 91, right hemisphere 3.1
1829 Male, age 74, unknown 2.4
2489 Female, age 72, unknown 1.5
2466 Female, age 79, unknown 1.0
2647 Male, age 75, left hemisphere 0.1
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 3.9
2199 Male, age 80, right hemisphere 8.2
2009 Female, age 91, both hemispheres 5.6
2629 Female, age 94, right hemisphere 5.6
2059 Female, age 85, both hemispheres 3.7
2394 Male, age 61, left hemisphere 1.5
1960 Male, age 74, unknown 1.4
2031 Female, age 72, unknown 1.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.2
Samples: 246

Max nTPM: 32.1
Min nTPM: 0.6
Std nTPM: 5.0
Median nTPM: 2.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 32.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 29.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 29.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 27.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 22.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 22.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 19.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 18.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 17.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.0
Samples: 246

Max nTPM: 34.2
Min nTPM: 0.7
Std nTPM: 3.8
Median nTPM: 3.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 34.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 30.8
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 20.1
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 19.6
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 18.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 17.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 17.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 15.2
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 14.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 14.5
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 13.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.8
Samples: 205

Max nTPM: 5.6
Min nTPM: 0.4
Std nTPM: 0.7
Median nTPM: 1.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 5.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 4.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 4.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 3.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 3.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 3.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 3.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.7
FF:10164-103B2 76 years, female 27.7
Globus pallidus
Scaled Tags Per Million: 5.2
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 4.8
Nucleus accumbens
Scaled Tags Per Million: 9.1
FF:10037-101F1 23-56 years, mixed 9.1
Putamen
Scaled Tags Per Million: 22.9
FF:10176-103C5 60 years, female 22.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Caudate
nTPM: 10.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 8.9
Sample A Female 14.4
Sample B Female 9.2
Sample C Male 9.3
Sample D Male 8.9
Putamen
nTPM: 8.3
Samples: 4

Max nTPM: 10.6
Min nTPM: 7.0
Sample A Female 10.6
Sample B Female 7.0
Sample C Male 8.2
Sample D Male 7.4
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.5
Sample A Female 11.5
Sample B Female 9.5
Sample C Male 12.3
Sample D Male 13.6
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.5
Sample A Female 8.6
Sample B Female 9.6
Sample C Male 6.5
Sample D Male 8.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.4
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.3
Sample A Male 2.4
Sample B Male 2.3
Sample C Female 2.4
Sample D Female 2.6
Septum
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.0
Sample A Male 2.9
Sample B Male 3.2
Sample C Female 2.0
Sample D Female 2.7
Ventral forebrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.2
Sample A Male 2.7
Sample B Male 2.7
Sample C Female 2.2
Sample D Female 3.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74635313 Antisense, RP_060215_03_F06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
74635313 Antisense, RP_060215_03_F06, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.