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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
RNA expressioni
Consensus:56.3 nTPM
HPA:56.3 nTPM
GTEx:59.7 nTPM
FANTOM5:225.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA003243
Glial cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.1
2481 Female, age 94, left hemisphere 51.1
2288 Male, age 75, left hemisphere 50.6
2846 Female, age 79, unknown 41.7
1854 Male, age 80, left hemisphere 41.3
1781 Male, age 74, unknown 40.4
2290 Female, age 72, unknown 38.7
1857 Female, age 85, left hemisphere 38.6
2289 Male, age 61, right hemisphere 34.9
Claustrum
nTPM: 45.7
1956 Male, age 74, unknown 56.5
2392 Female, age 94, both hemispheres 51.9
2198 Male, age 80, both hemispheres 48.3
2196 Female, age 79, unknown 45.0
2568 Male, age 61, both hemispheres 44.3
2292 Female, age 85, both hemispheres 43.8
2491 Male, age 75, both hemispheres 41.3
2284 Female, age 91, both hemispheres 41.1
2645 Female, age 72, unknown 39.4
Globus pallidus, externus
nTPM: 50.6
2772 Female, age 79, unknown 59.7
1996 Male, age 80, right hemisphere 58.6
2395 Male, age 75, both hemispheres 51.1
2646 Male, age 61, right hemisphere 45.2
2567 Female, age 72, unknown 38.6
Globus pallidus, internus
nTPM: 56.3
2287 Male, age 75, right hemisphere 69.0
2778 Female, age 91, both hemispheres 61.8
2111 Female, age 85, right hemisphere 59.6
2037 Male, age 80, right hemisphere 53.3
2483 Female, age 94, right hemisphere 53.0
1818 Male, age 74, unknown 52.1
2566 Female, age 72, unknown 45.2
Nucleus accumbens
nTPM: 44.2
2391 Female, age 94, left hemisphere 55.3
2286 Male, age 75, left hemisphere 51.2
1806 Female, age 85, left hemisphere 43.6
2732 Male, age 80, right hemisphere 42.2
2698 Female, age 72, unknown 41.3
1783 Male, age 74, unknown 40.7
2824 Male, age 61, right hemisphere 40.3
1856 Female, age 91, right hemisphere 39.0
Nucleus basalis of Meynert
nTPM: 41.7
2569 Male, age 61, both hemispheres 43.4
2821 Male, age 75, both hemispheres 42.1
2393 Male, age 80, right hemisphere 41.1
2484 Female, age 94, left hemisphere 40.0
Nucleus of the diagonal band
nTPM: 44.8
1812 Female, age 91, both hemispheres 50.8
2775 Male, age 80, right hemisphere 48.2
2029 Male, age 61, right hemisphere 44.4
2195 Female, age 85, both hemispheres 43.3
1979 Male, age 74, unknown 37.2
Olfactory tubercle
nTPM: 44.5
1846 Male, age 80, right hemisphere 52.0
1998 Female, age 91, both hemispheres 46.7
2856 Male, age 75, right hemisphere 39.9
2487 Female, age 94, left hemisphere 39.6
Putamen
nTPM: 41.3
2482 Female, age 94, left hemisphere 49.1
1829 Male, age 74, unknown 44.1
1937 Female, age 91, right hemisphere 41.9
2466 Female, age 79, unknown 39.8
2647 Male, age 75, left hemisphere 39.6
1838 Male, age 80, right hemisphere 38.2
2489 Female, age 72, unknown 36.4
Septal nuclei
nTPM: 43.5
2031 Female, age 72, unknown 53.8
1960 Male, age 74, unknown 50.2
2009 Female, age 91, both hemispheres 42.3
2394 Male, age 61, left hemisphere 41.3
2629 Female, age 94, right hemisphere 40.9
2199 Male, age 80, right hemisphere 37.9
2059 Female, age 85, both hemispheres 37.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 59.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.8
Samples: 246

Max nTPM: 124.1
Min nTPM: 23.3
Std nTPM: 15.1
Median nTPM: 53.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 124.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 116.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 104.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 92.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 89.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 89.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 87.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 85.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.9
Samples: 246

Max nTPM: 144.5
Min nTPM: 10.6
Std nTPM: 15.4
Median nTPM: 52.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 144.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 102.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 94.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 92.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 82.6
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 82.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 81.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 80.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 80.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 74.8
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 72.8
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Brain - Putamen (basal ganglia)
Average nTPM: 59.7
Samples: 205

Max nTPM: 128.3
Min nTPM: 19.0
Std nTPM: 18.0
Median nTPM: 57.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 128.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 123.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 111.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 111.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 106.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 95.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 92.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 92.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 90.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 90.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 89.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 225.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 127.9
FF:10164-103B2 76 years, female 127.9
Globus pallidus
Scaled Tags Per Million: 225.4
FF:10175-103C4 60 years, female 276.2
FF:10161-103A8 76 years, female 174.7
Nucleus accumbens
Scaled Tags Per Million: 151.0
FF:10037-101F1 23-56 years, mixed 151.0
Putamen
Scaled Tags Per Million: 112.0
FF:10176-103C5 60 years, female 112.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.