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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.1 nTPM
HPA:27.1 nTPM
GTEx:28.5 nTPM
FANTOM5:166.0 Scaled Tags Per Million
Pig:54.9 nTPM
Mouse:91.8 nTPM
Allen mouse:8.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.0
1857 Female, age 85, left hemisphere 21.1
1854 Male, age 80, left hemisphere 14.8
2481 Female, age 94, left hemisphere 14.1
1781 Male, age 74, unknown 13.0
2288 Male, age 75, left hemisphere 12.5
2290 Female, age 72, unknown 12.4
2289 Male, age 61, right hemisphere 9.4
2846 Female, age 79, unknown 7.0
Claustrum
nTPM: 17.1
2198 Male, age 80, both hemispheres 21.7
2568 Male, age 61, both hemispheres 21.3
2491 Male, age 75, both hemispheres 20.9
2284 Female, age 91, both hemispheres 17.6
2196 Female, age 79, unknown 17.3
2645 Female, age 72, unknown 17.2
2392 Female, age 94, both hemispheres 15.6
1956 Male, age 74, unknown 13.3
2292 Female, age 85, both hemispheres 8.9
Globus pallidus, externus
nTPM: 4.8
2646 Male, age 61, right hemisphere 8.3
2772 Female, age 79, unknown 6.9
1996 Male, age 80, right hemisphere 4.5
2395 Male, age 75, both hemispheres 4.3
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 4.1
2483 Female, age 94, right hemisphere 11.2
2287 Male, age 75, right hemisphere 10.0
2037 Male, age 80, right hemisphere 3.8
1818 Male, age 74, unknown 3.0
2778 Female, age 91, both hemispheres 0.9
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
Nucleus accumbens
nTPM: 16.3
1856 Female, age 91, right hemisphere 30.9
1806 Female, age 85, left hemisphere 21.1
2824 Male, age 61, right hemisphere 19.4
2286 Male, age 75, left hemisphere 17.8
1783 Male, age 74, unknown 16.4
2698 Female, age 72, unknown 12.6
2732 Male, age 80, right hemisphere 7.7
2391 Female, age 94, left hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 6.1
2569 Male, age 61, both hemispheres 9.6
2484 Female, age 94, left hemisphere 8.1
2393 Male, age 80, right hemisphere 6.5
2821 Male, age 75, both hemispheres 0.2
Nucleus of the diagonal band
nTPM: 27.1
2029 Male, age 61, right hemisphere 28.7
2195 Female, age 85, both hemispheres 28.1
1812 Female, age 91, both hemispheres 27.8
2775 Male, age 80, right hemisphere 27.8
1979 Male, age 74, unknown 22.9
Olfactory tubercle
nTPM: 26.9
1846 Male, age 80, right hemisphere 29.3
1998 Female, age 91, both hemispheres 28.2
2487 Female, age 94, left hemisphere 27.8
2856 Male, age 75, right hemisphere 22.2
Putamen
nTPM: 9.0
1838 Male, age 80, right hemisphere 17.2
1937 Female, age 91, right hemisphere 16.9
2482 Female, age 94, left hemisphere 9.0
2466 Female, age 79, unknown 8.1
2647 Male, age 75, left hemisphere 5.7
1829 Male, age 74, unknown 5.4
2489 Female, age 72, unknown 0.8
Septal nuclei
nTPM: 21.3
2031 Female, age 72, unknown 29.9
1960 Male, age 74, unknown 29.3
2059 Female, age 85, both hemispheres 23.5
2009 Female, age 91, both hemispheres 23.3
2629 Female, age 94, right hemisphere 20.5
2199 Male, age 80, right hemisphere 12.8
2394 Male, age 61, left hemisphere 9.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.3
Samples: 246

Max nTPM: 36.4
Min nTPM: 6.6
Std nTPM: 5.0
Median nTPM: 21.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 33.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 33.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 32.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 32.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 32.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 32.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 31.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 31.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 54.1
Min nTPM: 5.2
Std nTPM: 8.8
Median nTPM: 29.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 54.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 50.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 50.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 46.3
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 45.6
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 45.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 44.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 43.7
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 43.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 42.6
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 42.3
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Brain - Putamen (basal ganglia)
Average nTPM: 18.2
Samples: 205

Max nTPM: 35.1
Min nTPM: 6.0
Std nTPM: 4.3
Median nTPM: 18.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 35.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 30.6
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 29.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 27.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 27.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 26.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 25.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 25.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 25.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 25.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 25.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 166.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 148.6
FF:10164-103B2 76 years, female 148.6
Globus pallidus
Scaled Tags Per Million: 46.2
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 42.8
Nucleus accumbens
Scaled Tags Per Million: 143.8
FF:10037-101F1 23-56 years, mixed 143.8
Putamen
Scaled Tags Per Million: 166.0
FF:10176-103C5 60 years, female 166.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.9
Pig sample Sample description nTPM
Caudate
nTPM: 54.9
Samples: 4

Max nTPM: 65.4
Min nTPM: 45.2
Sample A Female 45.2
Sample B Female 55.8
Sample C Male 65.4
Sample D Male 53.3
Putamen
nTPM: 49.2
Samples: 4

Max nTPM: 63.9
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 48.8
Sample C Male 63.9
Sample D Male 52.4
Septum
nTPM: 49.6
Samples: 4

Max nTPM: 52.1
Min nTPM: 44.6
Sample A Female 44.6
Sample B Female 52.0
Sample C Male 52.1
Sample D Male 49.7
Ventral pallidum
nTPM: 51.3
Samples: 4

Max nTPM: 58.7
Min nTPM: 43.7
Sample A Female 51.2
Sample B Female 51.5
Sample C Male 58.7
Sample D Male 43.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 91.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.8
Samples: 4

Max nTPM: 69.1
Min nTPM: 63.9
Sample A Male 63.9
Sample B Male 65.4
Sample C Female 68.8
Sample D Female 69.1
Septum
nTPM: 91.8
Samples: 4

Max nTPM: 96.8
Min nTPM: 84.0
Sample A Male 96.8
Sample B Male 90.5
Sample C Female 84.0
Sample D Female 95.7
Ventral forebrain
nTPM: 83.5
Samples: 4

Max nTPM: 93.5
Min nTPM: 74.3
Sample A Male 74.3
Sample B Male 93.5
Sample C Female 78.9
Sample D Female 87.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.3
71570735 Antisense, RP_050421_01_H09, Mouse strain C57BL/6J (56 days, male) 8.3
Pallidum
Expression energy: 8.8
71570735 Antisense, RP_050421_01_H09, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.