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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.1 nTPM
HPA:51.1 nTPM
GTEx:49.7 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:91.9 nTPM
Mouse:291.8 nTPM
Allen mouse:17.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.0
2019 Male, age 18, unknown 56.5
1827 Male, age 72, unknown 47.7
2586 Male, age 75, left hemisphere 47.5
2411 Female, age 72, unknown 45.5
1870 Female, age 42, unknown 43.2
2828 Female, age 72, unknown 42.3
2219 Male, age 76, both hemispheres 42.1
2666 Male, age 74, left hemisphere 41.9
1833 Male, age 53, unknown 37.7
1830 Male, age 51, unknown 36.2
Dorsal raphe nucleus
nTPM: 48.8
2298 Female, age 72, unknown 58.8
1828 Male, age 53, unknown 51.8
2047 Male, age 72, unknown 50.5
2750 Male, age 76, both hemispheres 43.0
2016 Female, age 72, unknown 39.7
Inferior colliculus
nTPM: 46.7
2097 Female, age 72, unknown 54.0
1890 Male, age 53, unknown 49.2
1848 Female, age 42, unknown 46.3
2849 Male, age 72, unknown 37.4
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Pedunculopontine tegmental nucleus
nTPM: 44.9
1921 Female, age 85, both hemispheres 52.1
2334 Male, age 80, both hemispheres 44.2
2338 Male, age 61, both hemispheres 38.4
Periaquaductal grey, anterior
nTPM: 45.3
1795 Male, age 51, unknown 46.0
1947 Male, age 18, unknown 45.1
2502 Female, age 75, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 40.3
1840 Male, age 53, unknown 41.9
2464 Female, age 72, unknown 40.9
1831 Male, age 72, unknown 39.6
2850 Male, age 76, both hemispheres 38.7
Periaquaductal grey, lateral
nTPM: 39.2
2272 Male, age 74, both hemispheres 42.5
2053 Male, age 18, unknown 39.0
2140 Male, age 76, both hemispheres 36.0
Pretectal area
nTPM: 51.1
1816 Male, age 51, unknown 67.4
1817 Female, age 42, unknown 63.6
1944 Female, age 72, unknown 63.6
2007 Male, age 72, unknown 61.9
2667 Female, age 75, unknown 54.6
1815 Male, age 53, unknown 49.3
2224 Female, age 72, unknown 46.0
2273 Male, age 74, both hemispheres 43.6
2316 Male, age 76, right hemisphere 40.5
2825 Male, age 18, unknown 38.4
2407 Male, age 75, both hemispheres 33.8
Red nucleus
nTPM: 45.2
1821 Female, age 72, unknown 59.8
2785 Male, age 18, unknown 50.4
2725 Female, age 75, unknown 49.1
1954 Female, age 42, unknown 45.8
2503 Female, age 72, unknown 45.0
1904 Male, age 53, unknown 44.0
2823 Male, age 76, right hemisphere 43.9
2588 Male, age 74, left hemisphere 43.4
2227 Male, age 72, unknown 43.2
2769 Male, age 72, unknown 42.1
1865 Male, age 51, unknown 41.5
2584 Male, age 75, left hemisphere 34.0
Substantia nigra
nTPM: 50.9
1916 Female, age 42, unknown 69.1
1889 Female, age 72, unknown 59.3
1851 Male, age 51, unknown 57.9
2241 Male, age 72, unknown 55.2
1941 Male, age 53, unknown 53.4
2409 Female, age 72, unknown 48.6
2665 Male, age 74, both hemispheres 43.0
2699 Male, age 18, unknown 42.1
2590 Female, age 75, unknown 41.6
2583 Male, age 75, right hemisphere 39.2
Superior colliculus
nTPM: 43.7
2087 Female, age 72, unknown 53.4
1796 Male, age 53, unknown 48.3
1895 Male, age 76, right hemisphere 46.2
2261 Male, age 18, unknown 45.8
2587 Male, age 74, left hemisphere 45.4
2668 Female, age 75, unknown 43.1
2664 Male, age 75, both hemispheres 40.5
1995 Male, age 72, unknown 39.0
1839 Male, age 51, unknown 38.6
1913 Female, age 42, unknown 36.9
Ventral tegmental area
nTPM: 48.5
2410 Female, age 72, unknown 58.0
1915 Female, age 42, unknown 57.3
2218 Male, age 76, both hemispheres 49.5
1942 Male, age 51, unknown 46.1
2223 Female, age 72, unknown 40.3
2021 Male, age 53, unknown 39.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.7
Samples: 139

Max nTPM: 159.1
Min nTPM: 12.5
Std nTPM: 23.6
Median nTPM: 45.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 159.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 145.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 110.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 102.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 99.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 92.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 90.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 86.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 81.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 80.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.9
Pig sample Sample description nTPM
Midbrain
nTPM: 78.6
Samples: 4

Max nTPM: 106.6
Min nTPM: 55.6
Sample A Female 57.1
Sample B Female 55.6
Sample C Male 106.6
Sample D Male 94.9
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 65.9
Min nTPM: 53.3
Sample B Female 59.0
Sample C Male 65.9
Sample D Male 53.3
Substantia nigra
nTPM: 61.9
Samples: 4

Max nTPM: 77.5
Min nTPM: 45.4
Sample A Female 77.5
Sample B Female 45.4
Sample C Male 75.0
Sample D Male 49.6
Superior colliculi
nTPM: 91.9
Samples: 4

Max nTPM: 121.3
Min nTPM: 64.6
Sample A Female 96.8
Sample B Female 64.6
Sample C Male 121.3
Sample D Male 85.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 291.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.8
Samples: 4

Max nTPM: 302.0
Min nTPM: 280.0
Sample A Male 289.0
Sample B Male 280.0
Sample C Female 302.0
Sample D Female 296.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.2
67870466 Antisense, RP_041018_01_D08, Mouse strain C57BL/6J (56 days, male) 21.3
75694394 Antisense, RP_060518_03_F09, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.