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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:730.9 nTPM
HPA:730.9 nTPM
GTEx:623.1 nTPM
FANTOM5:1024.6 Scaled Tags Per Million
Pig:1036.1 nTPM
Mouse:2601.5 nTPM
Allen mouse:21.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 730.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 536.7
1830 Male, age 51, unknown 608.9
2586 Male, age 75, left hemisphere 599.1
1833 Male, age 53, unknown 564.4
2411 Female, age 72, unknown 561.3
2019 Male, age 18, unknown 534.1
2219 Male, age 76, both hemispheres 532.1
2828 Female, age 72, unknown 504.7
2666 Male, age 74, left hemisphere 497.0
1870 Female, age 42, unknown 491.4
1827 Male, age 72, unknown 473.8
Dorsal raphe nucleus
nTPM: 730.9
2047 Male, age 72, unknown 899.9
2016 Female, age 72, unknown 740.4
1828 Male, age 53, unknown 735.5
2298 Female, age 72, unknown 680.4
2750 Male, age 76, both hemispheres 598.1
Inferior colliculus
nTPM: 620.1
1890 Male, age 53, unknown 709.6
2097 Female, age 72, unknown 693.6
2849 Male, age 72, unknown 562.7
1848 Female, age 42, unknown 514.3
Median raphe nucleus
nTPM: 698.7
2220 Male, age 76, midline 698.7
Pedunculopontine tegmental nucleus
nTPM: 646.9
2338 Male, age 61, both hemispheres 677.3
2334 Male, age 80, both hemispheres 661.7
1921 Female, age 85, both hemispheres 601.7
Periaquaductal grey, anterior
nTPM: 546.0
1947 Male, age 18, unknown 649.2
2502 Female, age 75, unknown 526.6
1795 Male, age 51, unknown 462.3
Periaquaductal grey, dorsal
nTPM: 589.0
2850 Male, age 76, both hemispheres 679.2
1840 Male, age 53, unknown 598.9
2464 Female, age 72, unknown 582.7
1831 Male, age 72, unknown 495.2
Periaquaductal grey, lateral
nTPM: 526.1
2140 Male, age 76, both hemispheres 591.1
2272 Male, age 74, both hemispheres 510.7
2053 Male, age 18, unknown 476.4
Pretectal area
nTPM: 482.6
2273 Male, age 74, both hemispheres 583.2
2407 Male, age 75, both hemispheres 545.9
2825 Male, age 18, unknown 526.6
2224 Female, age 72, unknown 523.4
2316 Male, age 76, right hemisphere 481.9
2667 Female, age 75, unknown 465.2
1817 Female, age 42, unknown 448.0
1944 Female, age 72, unknown 445.2
2007 Male, age 72, unknown 435.4
1816 Male, age 51, unknown 432.1
1815 Male, age 53, unknown 421.3
Red nucleus
nTPM: 618.1
1821 Female, age 72, unknown 734.3
1865 Male, age 51, unknown 703.5
1954 Female, age 42, unknown 699.4
2725 Female, age 75, unknown 657.0
2769 Male, age 72, unknown 651.6
2227 Male, age 72, unknown 650.6
2503 Female, age 72, unknown 601.7
1904 Male, age 53, unknown 582.2
2823 Male, age 76, right hemisphere 576.3
2588 Male, age 74, left hemisphere 546.1
2584 Male, age 75, left hemisphere 538.0
2785 Male, age 18, unknown 476.5
Substantia nigra
nTPM: 699.2
2699 Male, age 18, unknown 957.7
1916 Female, age 42, unknown 782.8
2241 Male, age 72, unknown 739.2
1851 Male, age 51, unknown 720.1
1941 Male, age 53, unknown 696.4
2590 Female, age 75, unknown 695.8
2665 Male, age 74, both hemispheres 651.1
2409 Female, age 72, unknown 614.3
2583 Male, age 75, right hemisphere 595.2
1889 Female, age 72, unknown 539.0
Superior colliculus
nTPM: 500.5
1995 Male, age 72, unknown 609.4
1913 Female, age 42, unknown 548.9
2587 Male, age 74, left hemisphere 527.9
1796 Male, age 53, unknown 508.6
2664 Male, age 75, both hemispheres 501.6
1839 Male, age 51, unknown 479.4
2668 Female, age 75, unknown 473.1
1895 Male, age 76, right hemisphere 461.1
2087 Female, age 72, unknown 451.2
2261 Male, age 18, unknown 444.4
Ventral tegmental area
nTPM: 687.2
1942 Male, age 51, unknown 799.0
2223 Female, age 72, unknown 757.0
1915 Female, age 42, unknown 700.2
2021 Male, age 53, unknown 663.2
2218 Male, age 76, both hemispheres 625.2
2410 Female, age 72, unknown 578.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 623.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 623.1
Samples: 139

Max nTPM: 2488.3
Min nTPM: 159.3
Std nTPM: 413.7
Median nTPM: 500.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2488.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2225.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2180.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1791.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1767.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 1552.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1548.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1455.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1367.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1293.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1280.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1024.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1024.6
FF:10158-103A5 76 years, female 1024.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1036.1
Pig sample Sample description nTPM
Midbrain
nTPM: 946.9
Samples: 4

Max nTPM: 1119.1
Min nTPM: 863.3
Sample A Female 915.6
Sample B Female 1119.1
Sample C Male 889.6
Sample D Male 863.3
Periaqueductal gray
nTPM: 1036.1
Samples: 3

Max nTPM: 1231.7
Min nTPM: 854.4
Sample B Female 1231.7
Sample C Male 1022.2
Sample D Male 854.4
Substantia nigra
nTPM: 934.8
Samples: 4

Max nTPM: 995.6
Min nTPM: 872.5
Sample A Female 976.3
Sample B Female 995.6
Sample C Male 894.8
Sample D Male 872.5
Superior colliculi
nTPM: 825.9
Samples: 4

Max nTPM: 954.7
Min nTPM: 462.1
Sample A Female 952.4
Sample B Female 462.1
Sample C Male 934.3
Sample D Male 954.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2601.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2601.5
Samples: 4

Max nTPM: 2676.5
Min nTPM: 2559.9
Sample A Male 2559.9
Sample B Male 2571.1
Sample C Female 2676.5
Sample D Female 2598.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.6
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 21.6
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 21.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.