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SAR1B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:33.1 nTPM
FANTOM5:128.6 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:109.8 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.8
2411 Female, age 72, unknown 43.9
1870 Female, age 42, unknown 40.3
2019 Male, age 18, unknown 39.5
1830 Male, age 51, unknown 39.3
1833 Male, age 53, unknown 39.0
1827 Male, age 72, unknown 33.5
2828 Female, age 72, unknown 32.4
2666 Male, age 74, left hemisphere 27.7
2219 Male, age 76, both hemispheres 26.4
2586 Male, age 75, left hemisphere 25.8
Dorsal raphe nucleus
nTPM: 31.8
2750 Male, age 76, both hemispheres 38.4
2016 Female, age 72, unknown 34.6
1828 Male, age 53, unknown 33.3
2047 Male, age 72, unknown 28.0
2298 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 31.9
1848 Female, age 42, unknown 35.1
2097 Female, age 72, unknown 32.0
1890 Male, age 53, unknown 31.8
2849 Male, age 72, unknown 28.8
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Pedunculopontine tegmental nucleus
nTPM: 33.8
2334 Male, age 80, both hemispheres 34.1
2338 Male, age 61, both hemispheres 34.0
1921 Female, age 85, both hemispheres 33.4
Periaquaductal grey, anterior
nTPM: 28.6
1947 Male, age 18, unknown 31.5
2502 Female, age 75, unknown 30.6
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 30.1
2464 Female, age 72, unknown 33.9
1831 Male, age 72, unknown 31.5
2850 Male, age 76, both hemispheres 28.3
1840 Male, age 53, unknown 26.9
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 32.6
2140 Male, age 76, both hemispheres 29.0
2053 Male, age 18, unknown 28.9
Pretectal area
nTPM: 32.0
2407 Male, age 75, both hemispheres 36.2
2316 Male, age 76, right hemisphere 35.7
2273 Male, age 74, both hemispheres 35.4
1815 Male, age 53, unknown 33.6
1944 Female, age 72, unknown 32.3
1817 Female, age 42, unknown 32.1
2667 Female, age 75, unknown 32.1
2825 Male, age 18, unknown 31.1
2007 Male, age 72, unknown 30.6
2224 Female, age 72, unknown 27.1
1816 Male, age 51, unknown 26.5
Red nucleus
nTPM: 40.5
1865 Male, age 51, unknown 47.2
1954 Female, age 42, unknown 46.0
1904 Male, age 53, unknown 45.6
1821 Female, age 72, unknown 44.4
2227 Male, age 72, unknown 44.0
2823 Male, age 76, right hemisphere 42.1
2769 Male, age 72, unknown 41.5
2785 Male, age 18, unknown 38.0
2725 Female, age 75, unknown 37.5
2503 Female, age 72, unknown 36.6
2584 Male, age 75, left hemisphere 32.0
2588 Male, age 74, left hemisphere 31.7
Substantia nigra
nTPM: 32.1
2409 Female, age 72, unknown 42.4
2583 Male, age 75, right hemisphere 35.2
2590 Female, age 75, unknown 33.9
1889 Female, age 72, unknown 33.6
1851 Male, age 51, unknown 33.2
2699 Male, age 18, unknown 31.2
2241 Male, age 72, unknown 30.7
1941 Male, age 53, unknown 29.1
1916 Female, age 42, unknown 27.8
2665 Male, age 74, both hemispheres 23.9
Superior colliculus
nTPM: 33.3
1913 Female, age 42, unknown 38.8
1995 Male, age 72, unknown 38.1
1895 Male, age 76, right hemisphere 36.7
2587 Male, age 74, left hemisphere 35.7
1839 Male, age 51, unknown 35.1
2668 Female, age 75, unknown 30.8
2087 Female, age 72, unknown 30.0
2261 Male, age 18, unknown 29.9
2664 Male, age 75, both hemispheres 29.6
1796 Male, age 53, unknown 28.4
Ventral tegmental area
nTPM: 33.4
2410 Female, age 72, unknown 36.2
2223 Female, age 72, unknown 36.0
2021 Male, age 53, unknown 32.8
2218 Male, age 76, both hemispheres 32.4
1942 Male, age 51, unknown 32.1
1915 Female, age 42, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.1
Samples: 139

Max nTPM: 80.4
Min nTPM: 16.3
Std nTPM: 10.7
Median nTPM: 31.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 80.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 61.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 56.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 54.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 51.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 49.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.6
FF:10158-103A5 76 years, female 128.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 58.2
Min nTPM: 46.1
Sample A Female 58.2
Sample B Female 46.1
Sample C Male 46.6
Sample D Male 46.8
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 48.7
Min nTPM: 41.6
Sample B Female 42.0
Sample C Male 48.7
Sample D Male 41.6
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 49.9
Min nTPM: 35.9
Sample A Female 49.9
Sample B Female 35.9
Sample C Male 46.2
Sample D Male 43.4
Superior colliculi
nTPM: 47.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 37.4
Sample A Female 53.4
Sample B Female 37.4
Sample C Male 49.8
Sample D Male 47.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.8
Samples: 4

Max nTPM: 117.8
Min nTPM: 103.9
Sample A Male 117.8
Sample B Male 103.9
Sample C Female 105.4
Sample D Female 112.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
69873397 Antisense, RP_050512_01_B10, Mouse strain C57BL/6J (56 days, male) 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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