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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.8 nTPM
HPA:96.8 nTPM
GTEx:72.6 nTPM
FANTOM5:158.0 Scaled Tags Per Million
Pig:165.2 nTPM
Mouse:515.0 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.9
2411 Female, age 72, unknown 96.4
2019 Male, age 18, unknown 91.1
1827 Male, age 72, unknown 86.8
1870 Female, age 42, unknown 85.6
2219 Male, age 76, both hemispheres 81.8
1833 Male, age 53, unknown 79.3
1830 Male, age 51, unknown 78.5
2586 Male, age 75, left hemisphere 77.4
2666 Male, age 74, left hemisphere 76.7
2828 Female, age 72, unknown 75.0
Dorsal raphe nucleus
nTPM: 86.1
2298 Female, age 72, unknown 97.4
2750 Male, age 76, both hemispheres 96.1
2047 Male, age 72, unknown 80.0
1828 Male, age 53, unknown 78.7
2016 Female, age 72, unknown 78.4
Inferior colliculus
nTPM: 78.9
2097 Female, age 72, unknown 94.1
1890 Male, age 53, unknown 79.9
1848 Female, age 42, unknown 73.5
2849 Male, age 72, unknown 68.2
Median raphe nucleus
nTPM: 96.8
2220 Male, age 76, midline 96.8
Pedunculopontine tegmental nucleus
nTPM: 86.8
1921 Female, age 85, both hemispheres 91.1
2334 Male, age 80, both hemispheres 90.6
2338 Male, age 61, both hemispheres 78.8
Periaquaductal grey, anterior
nTPM: 88.5
2502 Female, age 75, unknown 90.8
1947 Male, age 18, unknown 89.2
1795 Male, age 51, unknown 85.7
Periaquaductal grey, dorsal
nTPM: 80.7
1831 Male, age 72, unknown 85.4
2464 Female, age 72, unknown 80.6
1840 Male, age 53, unknown 78.9
2850 Male, age 76, both hemispheres 77.9
Periaquaductal grey, lateral
nTPM: 76.4
2272 Male, age 74, both hemispheres 81.2
2053 Male, age 18, unknown 79.3
2140 Male, age 76, both hemispheres 68.7
Pretectal area
nTPM: 91.1
1944 Female, age 72, unknown 108.1
1816 Male, age 51, unknown 105.7
2007 Male, age 72, unknown 101.7
1817 Female, age 42, unknown 101.4
1815 Male, age 53, unknown 97.9
2224 Female, age 72, unknown 90.4
2667 Female, age 75, unknown 86.7
2273 Male, age 74, both hemispheres 85.2
2825 Male, age 18, unknown 77.6
2407 Male, age 75, both hemispheres 74.5
2316 Male, age 76, right hemisphere 72.5
Red nucleus
nTPM: 84.2
1821 Female, age 72, unknown 98.2
1954 Female, age 42, unknown 88.5
1904 Male, age 53, unknown 87.5
2503 Female, age 72, unknown 84.5
2725 Female, age 75, unknown 84.3
1865 Male, age 51, unknown 83.7
2785 Male, age 18, unknown 83.5
2227 Male, age 72, unknown 81.0
2769 Male, age 72, unknown 80.9
2584 Male, age 75, left hemisphere 80.2
2823 Male, age 76, right hemisphere 80.1
2588 Male, age 74, left hemisphere 77.5
Substantia nigra
nTPM: 93.6
2241 Male, age 72, unknown 112.3
2409 Female, age 72, unknown 102.7
1889 Female, age 72, unknown 100.2
1916 Female, age 42, unknown 99.3
1941 Male, age 53, unknown 97.5
1851 Male, age 51, unknown 94.0
2583 Male, age 75, right hemisphere 84.5
2590 Female, age 75, unknown 83.0
2699 Male, age 18, unknown 82.8
2665 Male, age 74, both hemispheres 79.7
Superior colliculus
nTPM: 82.9
2087 Female, age 72, unknown 95.7
2668 Female, age 75, unknown 91.9
2261 Male, age 18, unknown 91.5
2587 Male, age 74, left hemisphere 82.5
1796 Male, age 53, unknown 82.0
1913 Female, age 42, unknown 81.5
1895 Male, age 76, right hemisphere 76.8
1839 Male, age 51, unknown 76.6
2664 Male, age 75, both hemispheres 75.4
1995 Male, age 72, unknown 75.0
Ventral tegmental area
nTPM: 91.6
2410 Female, age 72, unknown 100.4
2218 Male, age 76, both hemispheres 96.0
1942 Male, age 51, unknown 91.2
1915 Female, age 42, unknown 90.5
2021 Male, age 53, unknown 86.5
2223 Female, age 72, unknown 84.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.6
Samples: 139

Max nTPM: 183.5
Min nTPM: 3.1
Std nTPM: 31.8
Median nTPM: 68.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 183.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 163.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 158.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 142.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 133.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 131.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 129.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 129.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 124.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.0
FF:10158-103A5 76 years, female 158.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.2
Pig sample Sample description nTPM
Midbrain
nTPM: 165.1
Samples: 4

Max nTPM: 205.5
Min nTPM: 129.2
Sample A Female 129.2
Sample B Female 156.7
Sample C Male 205.5
Sample D Male 168.8
Periaqueductal gray
nTPM: 124.3
Samples: 3

Max nTPM: 139.0
Min nTPM: 113.4
Sample B Female 113.4
Sample C Male 139.0
Sample D Male 120.4
Substantia nigra
nTPM: 144.6
Samples: 4

Max nTPM: 203.6
Min nTPM: 86.6
Sample A Female 203.6
Sample B Female 112.0
Sample C Male 176.2
Sample D Male 86.6
Superior colliculi
nTPM: 165.2
Samples: 4

Max nTPM: 207.4
Min nTPM: 99.5
Sample A Female 193.1
Sample B Female 99.5
Sample C Male 207.4
Sample D Male 160.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 515.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 515.0
Samples: 4

Max nTPM: 531.9
Min nTPM: 501.3
Sample A Male 504.7
Sample B Male 522.0
Sample C Female 501.3
Sample D Female 531.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
583562 Antisense, RP_040831_02_H12, Mouse strain C57BL/6J (56 days, male) 19.4
81599674 Antisense, RP_071219_04_H02, Mouse strain C57BL/6J (56 days, male) 11.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.