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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:14.7 nTPM
HPA:14.7 nTPM
GTEx:12.0 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:53.4 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011136Antibody HPA048565Antibody CAB037292
Glial cells Not detectedNot detectedLow
Neuronal cells Not detectedMediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Hippocampus
nTPM: 7.0
2529 Female, age 94, left hemisphere 9.4
1911 Female, age 85, right hemisphere 8.6
2621 Female, age 67, right hemisphere 7.8
1898 Male, age 80, left hemisphere 6.2
1855 Male, age 76, left hemisphere 5.8
2148 Female, age 91, left hemisphere 4.4
Dentate gyrus
nTPM: 7.0
2530 Female, age 94, left hemisphere 11.4
2246 Female, age 85, both hemispheres 9.0
2528 Male, age 74, both hemispheres 7.1
2531 Female, age 67, both hemispheres 6.4
1927 Female, age 91, both hemispheres 5.6
2010 Male, age 76, both hemispheres 2.4
Entorhinal gyrus
nTPM: 14.0
2613 Female, age 94, left hemisphere 20.9
2686 Male, age 75, right hemisphere 16.0
2764 Male, age 80, right hemisphere 14.6
1787 Male, age 76, left hemisphere 14.1
1938 Female, age 85, left hemisphere 13.5
2117 Female, age 91, right hemisphere 4.7
Hippocampus, CA1
nTPM: 6.4
2749 Male, age 80, left hemisphere 11.9
2527 Male, age 74, both hemispheres 10.6
1873 Female, age 85, both hemispheres 5.3
2082 Female, age 91, right hemisphere 4.1
2045 Male, age 76, both hemispheres 0.4
Hippocampus, CA2
nTPM: 8.0
2437 Female, age 94, left hemisphere 12.5
1892 Male, age 76, both hemispheres 10.5
2249 Male, age 74, both hemispheres 6.7
1940 Female, age 85, left hemisphere 6.4
1963 Male, age 80, left hemisphere 6.4
2113 Female, age 91, right hemisphere 5.5
Hippocampus, CA3
nTPM: 8.9
2137 Male, age 80, left hemisphere 18.1
1867 Male, age 76, both hemispheres 11.4
2436 Male, age 74, both hemispheres 7.6
2861 Female, age 67, both hemispheres 6.7
1891 Female, age 85, both hemispheres 5.9
2620 Female, age 94, left hemisphere 3.4
Parahippocampal cortex
nTPM: 14.7
2532 Female, age 72, left hemisphere 23.7
2622 Female, age 67, right hemisphere 21.1
1850 Male, age 80, both hemispheres 15.5
2693 Female, age 94, both hemispheres 14.6
2245 Female, age 91, both hemispheres 14.4
2250 Female, age 67, right hemisphere 13.1
1933 Female, age 85, both hemispheres 12.8
1990 Female, age 91, right hemisphere 11.9
2692 Male, age 74, both hemispheres 10.6
2018 Male, age 76, both hemispheres 9.0
Perirhinal gyrus
nTPM: 12.4
1794 Male, age 80, right hemisphere 13.3
2521 Female, age 94, right hemisphere 13.2
2848 Male, age 76, right hemisphere 13.0
1841 Female, age 85, right hemisphere 11.6
1847 Female, age 91, left hemisphere 10.7
Subiculum
nTPM: 9.4
2438 Female, age 94, left hemisphere 15.4
1901 Male, age 80, both hemispheres 12.3
2619 Male, age 74, both hemispheres 11.9
1977 Female, age 85, both hemispheres 7.5
2042 Male, age 76, both hemispheres 6.4
2729 Female, age 91, right hemisphere 3.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 26.0
Min nTPM: 6.9
Std nTPM: 3.2
Median nTPM: 11.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 26.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 24.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 23.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 20.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 20.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 20.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 20.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 19.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 18.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 18.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.1
FF:10153-102I9 76 years, female 17.6
FF:10169-103B7 60 years, female 16.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.1
Sample A Female 16.1
Sample B Female 14.8
Sample C Male 17.6
Sample D Male 10.1
Entorhinal cortex
nTPM: 30.6
Samples: 4

Max nTPM: 32.6
Min nTPM: 28.3
Sample A Female 32.3
Sample B Female 29.3
Sample C Male 28.3
Sample D Male 32.6
Subiculum
nTPM: 16.7
Samples: 4

Max nTPM: 24.6
Min nTPM: 13.4
Sample A Female 24.6
Sample B Female 14.9
Sample C Male 13.4
Sample D Male 13.9
Ventral hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 9.1
Sample A Female 9.1
Sample B Female 10.4
Sample C Male 13.2
Sample D Male 21.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 53.4
Samples: 4

Max nTPM: 57.8
Min nTPM: 42.3
Sample A Male 56.0
Sample B Male 57.8
Sample C Female 42.3
Sample D Female 57.3
Hippocampal formation
nTPM: 28.2
Samples: 4

Max nTPM: 28.9
Min nTPM: 27.6
Sample A Male 28.9
Sample B Male 28.2
Sample C Female 27.6
Sample D Female 28.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
71307268 Antisense, RP_050825_01_E10, Mouse strain C57BL/6J (56 days, male) 4.1
73512377 Antisense, RP_050825_01_E10, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.