ABOUTMENU
HELP
NEWS
MSI2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:52.8 nTPM
HPA:52.8 nTPM
GTEx:42.3 nTPM
FANTOM5:28.1 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:38.5 nTPM
Allen mouse:5.5 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB022300
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.7
2481 Female, age 94, left hemisphere 52.0
1854 Male, age 80, left hemisphere 44.8
2289 Male, age 61, right hemisphere 44.6
2288 Male, age 75, left hemisphere 44.5
2290 Female, age 72, unknown 42.8
1857 Female, age 85, left hemisphere 41.1
1781 Male, age 74, unknown 33.4
2846 Female, age 79, unknown 30.7
Claustrum
nTPM: 28.1
2645 Female, age 72, unknown 33.8
2392 Female, age 94, both hemispheres 29.9
2284 Female, age 91, both hemispheres 29.6
2196 Female, age 79, unknown 28.8
2491 Male, age 75, both hemispheres 27.5
2568 Male, age 61, both hemispheres 27.2
2198 Male, age 80, both hemispheres 27.0
1956 Male, age 74, unknown 25.0
2292 Female, age 85, both hemispheres 24.3
Globus pallidus, externus
nTPM: 51.4
2646 Male, age 61, right hemisphere 66.6
1996 Male, age 80, right hemisphere 57.3
2567 Female, age 72, unknown 51.7
2772 Female, age 79, unknown 42.2
2395 Male, age 75, both hemispheres 39.2
Globus pallidus, internus
nTPM: 52.8
1818 Male, age 74, unknown 62.8
2037 Male, age 80, right hemisphere 62.0
2483 Female, age 94, right hemisphere 55.8
2111 Female, age 85, right hemisphere 49.8
2287 Male, age 75, right hemisphere 48.6
2566 Female, age 72, unknown 47.1
2778 Female, age 91, both hemispheres 43.6
Nucleus accumbens
nTPM: 40.8
2732 Male, age 80, right hemisphere 56.7
2286 Male, age 75, left hemisphere 45.2
1806 Female, age 85, left hemisphere 44.7
2698 Female, age 72, unknown 39.2
2391 Female, age 94, left hemisphere 37.5
2824 Male, age 61, right hemisphere 35.5
1783 Male, age 74, unknown 34.7
1856 Female, age 91, right hemisphere 33.2
Nucleus basalis of Meynert
nTPM: 48.6
2569 Male, age 61, both hemispheres 74.0
2393 Male, age 80, right hemisphere 44.3
2484 Female, age 94, left hemisphere 41.6
2821 Male, age 75, both hemispheres 34.6
Nucleus of the diagonal band
nTPM: 39.2
1979 Male, age 74, unknown 58.7
2195 Female, age 85, both hemispheres 41.5
1812 Female, age 91, both hemispheres 37.4
2775 Male, age 80, right hemisphere 35.4
2029 Male, age 61, right hemisphere 23.0
Olfactory tubercle
nTPM: 34.2
1846 Male, age 80, right hemisphere 39.7
2856 Male, age 75, right hemisphere 38.2
2487 Female, age 94, left hemisphere 33.3
1998 Female, age 91, both hemispheres 25.5
Putamen
nTPM: 43.0
2647 Male, age 75, left hemisphere 53.8
2489 Female, age 72, unknown 53.4
2482 Female, age 94, left hemisphere 45.3
1829 Male, age 74, unknown 41.4
1838 Male, age 80, right hemisphere 40.3
2466 Female, age 79, unknown 33.7
1937 Female, age 91, right hemisphere 33.3
Septal nuclei
nTPM: 43.0
2199 Male, age 80, right hemisphere 68.9
2059 Female, age 85, both hemispheres 49.7
2394 Male, age 61, left hemisphere 46.3
2009 Female, age 91, both hemispheres 41.0
2629 Female, age 94, right hemisphere 34.0
1960 Male, age 74, unknown 31.3
2031 Female, age 72, unknown 29.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.3
Samples: 246

Max nTPM: 80.0
Min nTPM: 9.8
Std nTPM: 13.6
Median nTPM: 41.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 80.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 79.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 78.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 75.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 72.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 71.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 71.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 70.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 70.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 70.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 70.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.1
Samples: 246

Max nTPM: 90.4
Min nTPM: 9.7
Std nTPM: 15.3
Median nTPM: 38.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 90.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 89.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 86.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 85.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 83.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 81.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 81.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 76.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 75.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 75.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 74.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 40.0
Samples: 205

Max nTPM: 81.4
Min nTPM: 10.3
Std nTPM: 13.9
Median nTPM: 39.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 81.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 78.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 78.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 72.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 72.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 70.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 67.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 66.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 66.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 65.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 65.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.8
FF:10164-103B2 76 years, female 22.8
Globus pallidus
Scaled Tags Per Million: 28.1
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 22.4
Nucleus accumbens
Scaled Tags Per Million: 12.8
FF:10037-101F1 23-56 years, mixed 12.8
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.9
Pig sample Sample description nTPM
Caudate
nTPM: 41.2
Samples: 4

Max nTPM: 44.1
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 44.1
Sample C Male 40.3
Sample D Male 43.9
Putamen
nTPM: 40.8
Samples: 4

Max nTPM: 46.3
Min nTPM: 38.5
Sample A Female 46.3
Sample B Female 38.5
Sample C Male 39.1
Sample D Male 39.2
Septum
nTPM: 42.9
Samples: 4

Max nTPM: 54.0
Min nTPM: 37.0
Sample A Female 37.0
Sample B Female 40.0
Sample C Male 54.0
Sample D Male 40.4
Ventral pallidum
nTPM: 42.5
Samples: 4

Max nTPM: 56.1
Min nTPM: 32.7
Sample A Female 32.7
Sample B Female 38.8
Sample C Male 56.1
Sample D Male 42.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 28.2
Sample A Male 29.9
Sample B Male 28.2
Sample C Female 30.8
Sample D Female 29.8
Septum
nTPM: 38.5
Samples: 4

Max nTPM: 41.1
Min nTPM: 36.4
Sample A Male 39.3
Sample B Male 37.2
Sample C Female 36.4
Sample D Female 41.1
Ventral forebrain
nTPM: 33.3
Samples: 4

Max nTPM: 36.8
Min nTPM: 27.5
Sample A Male 35.7
Sample B Male 36.8
Sample C Female 27.5
Sample D Female 33.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.8
71280976 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 4.8
73616034 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 3.0
Pallidum
Expression energy: 5.5
71280976 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 5.5
73616034 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 4.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.