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MSI2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.6 nTPM
HPA:88.6 nTPM
GTEx:41.9 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:50.2 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
2586 Male, age 75, left hemisphere 66.6
2219 Male, age 76, both hemispheres 57.3
2828 Female, age 72, unknown 56.7
1833 Male, age 53, unknown 55.3
2411 Female, age 72, unknown 46.4
2666 Male, age 74, left hemisphere 46.2
1827 Male, age 72, unknown 44.5
1830 Male, age 51, unknown 43.5
1870 Female, age 42, unknown 43.2
2019 Male, age 18, unknown 41.3
Dorsal raphe nucleus
nTPM: 70.1
2016 Female, age 72, unknown 83.1
1828 Male, age 53, unknown 79.1
2047 Male, age 72, unknown 69.9
2298 Female, age 72, unknown 62.8
2750 Male, age 76, both hemispheres 55.7
Inferior colliculus
nTPM: 60.0
1890 Male, age 53, unknown 74.7
2097 Female, age 72, unknown 62.8
1848 Female, age 42, unknown 51.2
2849 Male, age 72, unknown 51.2
Median raphe nucleus
nTPM: 80.0
2220 Male, age 76, midline 80.0
Pedunculopontine tegmental nucleus
nTPM: 53.2
1921 Female, age 85, both hemispheres 56.7
2334 Male, age 80, both hemispheres 52.5
2338 Male, age 61, both hemispheres 50.3
Periaquaductal grey, anterior
nTPM: 51.7
2502 Female, age 75, unknown 58.1
1795 Male, age 51, unknown 51.9
1947 Male, age 18, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 78.8
1831 Male, age 72, unknown 107.7
2850 Male, age 76, both hemispheres 86.6
1840 Male, age 53, unknown 64.4
2464 Female, age 72, unknown 56.4
Periaquaductal grey, lateral
nTPM: 69.6
2140 Male, age 76, both hemispheres 85.4
2272 Male, age 74, both hemispheres 62.9
2053 Male, age 18, unknown 60.4
Pretectal area
nTPM: 51.1
2273 Male, age 74, both hemispheres 67.9
2667 Female, age 75, unknown 62.5
2224 Female, age 72, unknown 57.9
2825 Male, age 18, unknown 55.6
2316 Male, age 76, right hemisphere 54.1
1944 Female, age 72, unknown 51.5
2407 Male, age 75, both hemispheres 49.9
1815 Male, age 53, unknown 45.1
1816 Male, age 51, unknown 44.4
1817 Female, age 42, unknown 42.2
2007 Male, age 72, unknown 31.0
Red nucleus
nTPM: 55.8
1954 Female, age 42, unknown 70.8
1821 Female, age 72, unknown 67.0
2227 Male, age 72, unknown 59.2
2769 Male, age 72, unknown 59.2
2823 Male, age 76, right hemisphere 58.8
1904 Male, age 53, unknown 57.8
2725 Female, age 75, unknown 55.0
1865 Male, age 51, unknown 54.4
2503 Female, age 72, unknown 54.1
2584 Male, age 75, left hemisphere 49.9
2588 Male, age 74, left hemisphere 46.4
2785 Male, age 18, unknown 37.4
Substantia nigra
nTPM: 88.6
2699 Male, age 18, unknown 175.4
1916 Female, age 42, unknown 146.6
2241 Male, age 72, unknown 98.1
1851 Male, age 51, unknown 93.2
2409 Female, age 72, unknown 74.1
1941 Male, age 53, unknown 73.9
2665 Male, age 74, both hemispheres 62.5
2590 Female, age 75, unknown 55.6
2583 Male, age 75, right hemisphere 54.5
1889 Female, age 72, unknown 52.3
Superior colliculus
nTPM: 48.7
2664 Male, age 75, both hemispheres 63.3
2087 Female, age 72, unknown 53.5
2668 Female, age 75, unknown 50.9
1995 Male, age 72, unknown 50.2
1796 Male, age 53, unknown 47.6
1839 Male, age 51, unknown 47.2
2587 Male, age 74, left hemisphere 45.6
2261 Male, age 18, unknown 45.2
1913 Female, age 42, unknown 42.1
1895 Male, age 76, right hemisphere 41.8
Ventral tegmental area
nTPM: 76.8
1915 Female, age 42, unknown 100.0
1942 Male, age 51, unknown 87.1
2218 Male, age 76, both hemispheres 82.1
2410 Female, age 72, unknown 69.7
2021 Male, age 53, unknown 66.6
2223 Female, age 72, unknown 55.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.9
Samples: 139

Max nTPM: 78.1
Min nTPM: 16.4
Std nTPM: 12.6
Median nTPM: 40.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 68.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 68.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 68.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 66.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 63.3
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 62.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.0
FF:10158-103A5 76 years, female 27.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.1
Pig sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 56.1
Min nTPM: 47.6
Sample A Female 47.6
Sample B Female 56.1
Sample C Male 47.7
Sample D Male 50.1
Periaqueductal gray
nTPM: 52.0
Samples: 3

Max nTPM: 56.2
Min nTPM: 48.2
Sample B Female 56.2
Sample C Male 48.2
Sample D Male 51.6
Substantia nigra
nTPM: 58.1
Samples: 4

Max nTPM: 73.8
Min nTPM: 44.6
Sample A Female 58.3
Sample B Female 55.8
Sample C Male 73.8
Sample D Male 44.6
Superior colliculi
nTPM: 51.2
Samples: 4

Max nTPM: 59.8
Min nTPM: 44.8
Sample A Female 49.5
Sample B Female 59.8
Sample C Male 44.8
Sample D Male 50.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 51.7
Min nTPM: 48.6
Sample A Male 48.6
Sample B Male 50.4
Sample C Female 50.2
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
71280976 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 4.3
73616034 Antisense, RP_050818_02_A01, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.