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GDPD1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:6.0 nTPM
FANTOM5:41.3 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:53.1 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.6
2288 Male, age 75, left hemisphere 3.7
1857 Female, age 85, left hemisphere 3.2
2290 Female, age 72, unknown 2.9
1781 Male, age 74, unknown 2.8
2846 Female, age 79, unknown 2.8
1854 Male, age 80, left hemisphere 2.0
2481 Female, age 94, left hemisphere 2.0
2289 Male, age 61, right hemisphere 1.3
Claustrum
nTPM: 3.1
2284 Female, age 91, both hemispheres 4.3
2392 Female, age 94, both hemispheres 4.3
2645 Female, age 72, unknown 3.7
2491 Male, age 75, both hemispheres 3.6
2568 Male, age 61, both hemispheres 3.3
2198 Male, age 80, both hemispheres 2.9
1956 Male, age 74, unknown 2.4
2196 Female, age 79, unknown 1.7
2292 Female, age 85, both hemispheres 1.5
Globus pallidus, externus
nTPM: 2.2
2395 Male, age 75, both hemispheres 3.5
2772 Female, age 79, unknown 3.1
1996 Male, age 80, right hemisphere 1.9
2646 Male, age 61, right hemisphere 1.4
2567 Female, age 72, unknown 1.2
Globus pallidus, internus
nTPM: 2.4
2287 Male, age 75, right hemisphere 3.2
1818 Male, age 74, unknown 3.0
2037 Male, age 80, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.3
2483 Female, age 94, right hemisphere 2.0
2566 Female, age 72, unknown 2.0
2111 Female, age 85, right hemisphere 1.8
Nucleus accumbens
nTPM: 2.6
1856 Female, age 91, right hemisphere 3.9
2286 Male, age 75, left hemisphere 3.7
2824 Male, age 61, right hemisphere 3.0
2391 Female, age 94, left hemisphere 2.6
1806 Female, age 85, left hemisphere 2.1
2698 Female, age 72, unknown 2.0
1783 Male, age 74, unknown 1.9
2732 Male, age 80, right hemisphere 1.7
Nucleus basalis of Meynert
nTPM: 2.5
2393 Male, age 80, right hemisphere 3.6
2484 Female, age 94, left hemisphere 3.2
2821 Male, age 75, both hemispheres 2.5
2569 Male, age 61, both hemispheres 0.6
Nucleus of the diagonal band
nTPM: 4.3
2029 Male, age 61, right hemisphere 6.0
2775 Male, age 80, right hemisphere 4.5
1812 Female, age 91, both hemispheres 4.4
2195 Female, age 85, both hemispheres 3.8
1979 Male, age 74, unknown 2.8
Olfactory tubercle
nTPM: 4.3
1998 Female, age 91, both hemispheres 5.2
2856 Male, age 75, right hemisphere 4.4
2487 Female, age 94, left hemisphere 4.1
1846 Male, age 80, right hemisphere 3.5
Putamen
nTPM: 3.1
2466 Female, age 79, unknown 3.9
1838 Male, age 80, right hemisphere 3.7
1937 Female, age 91, right hemisphere 3.5
1829 Male, age 74, unknown 3.2
2489 Female, age 72, unknown 2.7
2647 Male, age 75, left hemisphere 2.4
2482 Female, age 94, left hemisphere 1.9
Septal nuclei
nTPM: 4.2
2009 Female, age 91, both hemispheres 5.3
1960 Male, age 74, unknown 5.0
2629 Female, age 94, right hemisphere 4.8
2031 Female, age 72, unknown 4.7
2394 Male, age 61, left hemisphere 3.8
2059 Female, age 85, both hemispheres 2.9
2199 Male, age 80, right hemisphere 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.0
Samples: 246

Max nTPM: 20.0
Min nTPM: 1.9
Std nTPM: 2.2
Median nTPM: 5.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 20.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 11.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 11.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 10.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 10.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 10.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 10.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 10.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 9.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 9.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 11.6
Min nTPM: 1.1
Std nTPM: 2.2
Median nTPM: 5.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 11.6
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 10.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 10.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 10.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 10.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 10.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 10.3
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 10.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 10.0
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 10.0
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 10.0
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Brain - Putamen (basal ganglia)
Average nTPM: 5.2
Samples: 205

Max nTPM: 13.8
Min nTPM: 1.4
Std nTPM: 1.9
Median nTPM: 5.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 13.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 10.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 10.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 10.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 9.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 9.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 8.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 8.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 8.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 8.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 8.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.6
FF:10164-103B2 76 years, female 21.6
Globus pallidus
Scaled Tags Per Million: 32.6
FF:10175-103C4 60 years, female 47.3
FF:10161-103A8 76 years, female 17.8
Nucleus accumbens
Scaled Tags Per Million: 41.3
FF:10037-101F1 23-56 years, mixed 41.3
Putamen
Scaled Tags Per Million: 35.8
FF:10176-103C5 60 years, female 35.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Caudate
nTPM: 21.1
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.5
Sample A Female 20.3
Sample B Female 19.5
Sample C Male 24.8
Sample D Male 19.9
Putamen
nTPM: 25.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 19.1
Sample C Male 44.7
Sample D Male 19.9
Septum
nTPM: 21.5
Samples: 4

Max nTPM: 24.1
Min nTPM: 17.9
Sample A Female 21.2
Sample B Female 22.6
Sample C Male 24.1
Sample D Male 17.9
Ventral pallidum
nTPM: 21.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 15.3
Sample A Female 25.9
Sample B Female 20.1
Sample C Male 22.5
Sample D Male 15.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.1
Samples: 4

Max nTPM: 42.8
Min nTPM: 38.3
Sample A Male 38.3
Sample B Male 38.5
Sample C Female 42.8
Sample D Female 40.7
Septum
nTPM: 53.1
Samples: 4

Max nTPM: 56.8
Min nTPM: 49.2
Sample A Male 49.2
Sample B Male 53.3
Sample C Female 56.8
Sample D Female 53.1
Ventral forebrain
nTPM: 44.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 42.2
Sample A Male 42.2
Sample B Male 45.4
Sample C Female 43.2
Sample D Female 46.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
70429507 Antisense, RP_050614_01_G12, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
70429507 Antisense, RP_050614_01_G12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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