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JPH3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.7 nTPM
HPA:42.7 nTPM
GTEx:128.6 nTPM
FANTOM5:54.6 Scaled Tags Per Million
Mouse:66.3 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Hippocampus
nTPM: 42.7
2621 Female, age 67, right hemisphere 75.0
2529 Female, age 94, left hemisphere 50.9
2148 Female, age 91, left hemisphere 43.2
1911 Female, age 85, right hemisphere 43.1
1898 Male, age 80, left hemisphere 23.5
1855 Male, age 76, left hemisphere 20.3
Dentate gyrus
nTPM: 31.1
2531 Female, age 67, both hemispheres 57.9
1927 Female, age 91, both hemispheres 54.1
2530 Female, age 94, left hemisphere 26.6
2528 Male, age 74, both hemispheres 20.0
2010 Male, age 76, both hemispheres 15.3
2246 Female, age 85, both hemispheres 12.8
Entorhinal gyrus
nTPM: 24.5
2613 Female, age 94, left hemisphere 50.4
2686 Male, age 75, right hemisphere 31.8
2764 Male, age 80, right hemisphere 19.1
1938 Female, age 85, left hemisphere 17.6
1787 Male, age 76, left hemisphere 16.8
2117 Female, age 91, right hemisphere 11.2
Hippocampus, CA1
nTPM: 37.0
2749 Male, age 80, left hemisphere 74.0
2527 Male, age 74, both hemispheres 50.7
2082 Female, age 91, right hemisphere 26.4
1873 Female, age 85, both hemispheres 25.9
2045 Male, age 76, both hemispheres 8.2
Hippocampus, CA2
nTPM: 31.5
1963 Male, age 80, left hemisphere 74.4
2113 Female, age 91, right hemisphere 38.3
2437 Female, age 94, left hemisphere 26.7
1892 Male, age 76, both hemispheres 24.5
2249 Male, age 74, both hemispheres 21.6
1940 Female, age 85, left hemisphere 3.7
Hippocampus, CA3
nTPM: 41.9
2137 Male, age 80, left hemisphere 79.4
2861 Female, age 67, both hemispheres 64.4
2620 Female, age 94, left hemisphere 54.1
1867 Male, age 76, both hemispheres 19.5
2436 Male, age 74, both hemispheres 19.1
1891 Female, age 85, both hemispheres 14.7
Parahippocampal cortex
nTPM: 23.6
2245 Female, age 91, both hemispheres 60.9
2622 Female, age 67, right hemisphere 37.7
2250 Female, age 67, right hemisphere 22.8
2693 Female, age 94, both hemispheres 22.0
1990 Female, age 91, right hemisphere 18.0
2692 Male, age 74, both hemispheres 17.2
2018 Male, age 76, both hemispheres 15.8
2532 Female, age 72, left hemisphere 15.2
1933 Female, age 85, both hemispheres 13.5
1850 Male, age 80, both hemispheres 13.3
Perirhinal gyrus
nTPM: 21.3
1847 Female, age 91, left hemisphere 31.8
2521 Female, age 94, right hemisphere 27.9
1794 Male, age 80, right hemisphere 18.8
1841 Female, age 85, right hemisphere 16.7
2848 Male, age 76, right hemisphere 11.5
Subiculum
nTPM: 16.6
1901 Male, age 80, both hemispheres 21.7
2438 Female, age 94, left hemisphere 19.2
2619 Male, age 74, both hemispheres 15.9
2729 Female, age 91, right hemisphere 15.7
2042 Male, age 76, both hemispheres 14.6
1977 Female, age 85, both hemispheres 12.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 128.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 128.6
Samples: 197

Max nTPM: 570.7
Min nTPM: 4.1
Std nTPM: 83.8
Median nTPM: 115.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 570.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 397.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 375.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 358.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 350.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 340.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 338.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 318.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 317.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 277.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 275.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.6
FF:10169-103B7 60 years, female 58.5
FF:10153-102I9 76 years, female 50.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 60.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 52.1
Sample A Male 69.7
Sample B Male 66.0
Sample C Female 53.7
Sample D Female 52.1
Hippocampal formation
nTPM: 66.3
Samples: 4

Max nTPM: 71.8
Min nTPM: 61.4
Sample A Male 61.4
Sample B Male 71.8
Sample C Female 66.9
Sample D Female 65.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
69735670 Antisense, RP_050503_03_C06, Mouse strain C57BL/6J (56 days, male) 6.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.