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PDLIM3
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:13.3 nTPM
HPA:13.3 nTPM
GTEx:23.7 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:42.3 nTPM
Mouse:3.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004749
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.5
1857 Female, age 85, left hemisphere 14.4
2289 Male, age 61, right hemisphere 13.4
2290 Female, age 72, unknown 13.4
2481 Female, age 94, left hemisphere 13.4
1854 Male, age 80, left hemisphere 12.5
2288 Male, age 75, left hemisphere 11.4
2846 Female, age 79, unknown 10.9
1781 Male, age 74, unknown 10.4
Claustrum
nTPM: 9.9
2196 Female, age 79, unknown 11.0
2198 Male, age 80, both hemispheres 10.5
2491 Male, age 75, both hemispheres 10.2
1956 Male, age 74, unknown 10.1
2392 Female, age 94, both hemispheres 9.9
2284 Female, age 91, both hemispheres 9.8
2645 Female, age 72, unknown 9.4
2568 Male, age 61, both hemispheres 9.3
2292 Female, age 85, both hemispheres 9.1
Globus pallidus, externus
nTPM: 13.3
2646 Male, age 61, right hemisphere 15.8
1996 Male, age 80, right hemisphere 15.3
2772 Female, age 79, unknown 13.8
2395 Male, age 75, both hemispheres 11.0
2567 Female, age 72, unknown 10.6
Globus pallidus, internus
nTPM: 13.0
2483 Female, age 94, right hemisphere 15.1
1818 Male, age 74, unknown 13.9
2037 Male, age 80, right hemisphere 13.8
2778 Female, age 91, both hemispheres 13.2
2287 Male, age 75, right hemisphere 12.7
2566 Female, age 72, unknown 12.2
2111 Female, age 85, right hemisphere 10.1
Nucleus accumbens
nTPM: 12.8
1806 Female, age 85, left hemisphere 15.2
2732 Male, age 80, right hemisphere 14.8
2286 Male, age 75, left hemisphere 12.9
2698 Female, age 72, unknown 12.8
1856 Female, age 91, right hemisphere 12.3
1783 Male, age 74, unknown 11.8
2824 Male, age 61, right hemisphere 11.7
2391 Female, age 94, left hemisphere 10.8
Nucleus basalis of Meynert
nTPM: 12.8
2569 Male, age 61, both hemispheres 17.8
2393 Male, age 80, right hemisphere 11.2
2484 Female, age 94, left hemisphere 11.2
2821 Male, age 75, both hemispheres 11.1
Nucleus of the diagonal band
nTPM: 12.8
1979 Male, age 74, unknown 14.5
1812 Female, age 91, both hemispheres 13.0
2775 Male, age 80, right hemisphere 13.0
2195 Female, age 85, both hemispheres 12.4
2029 Male, age 61, right hemisphere 11.1
Olfactory tubercle
nTPM: 11.2
1846 Male, age 80, right hemisphere 12.7
2487 Female, age 94, left hemisphere 11.2
2856 Male, age 75, right hemisphere 10.6
1998 Female, age 91, both hemispheres 10.2
Putamen
nTPM: 10.8
2482 Female, age 94, left hemisphere 12.0
1937 Female, age 91, right hemisphere 11.0
1838 Male, age 80, right hemisphere 10.9
1829 Male, age 74, unknown 10.6
2489 Female, age 72, unknown 10.6
2466 Female, age 79, unknown 10.5
2647 Male, age 75, left hemisphere 10.2
Septal nuclei
nTPM: 12.7
2199 Male, age 80, right hemisphere 14.6
2059 Female, age 85, both hemispheres 14.4
1960 Male, age 74, unknown 12.4
2009 Female, age 91, both hemispheres 12.4
2629 Female, age 94, right hemisphere 12.0
2394 Male, age 61, left hemisphere 11.7
2031 Female, age 72, unknown 11.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.3
Samples: 246

Max nTPM: 49.6
Min nTPM: 5.4
Std nTPM: 8.2
Median nTPM: 17.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 49.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 48.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 48.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 44.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 41.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 40.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 99.4
Min nTPM: 7.6
Std nTPM: 11.9
Median nTPM: 20.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 99.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 57.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 56.8
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 56.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 55.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 54.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 53.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 52.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 51.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 50.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 49.6
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Brain - Putamen (basal ganglia)
Average nTPM: 15.1
Samples: 205

Max nTPM: 41.9
Min nTPM: 4.4
Std nTPM: 6.5
Median nTPM: 14.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 41.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 40.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 38.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 38.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 37.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 32.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 32.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 29.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 27.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 27.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 26.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.4
FF:10164-103B2 76 years, female 28.4
Globus pallidus
Scaled Tags Per Million: 15.6
FF:10175-103C4 60 years, female 16.5
FF:10161-103A8 76 years, female 14.6
Nucleus accumbens
Scaled Tags Per Million: 14.2
FF:10037-101F1 23-56 years, mixed 14.2
Putamen
Scaled Tags Per Million: 24.4
FF:10176-103C5 60 years, female 24.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.3
Pig sample Sample description nTPM
Caudate
nTPM: 34.8
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.6
Sample A Female 33.8
Sample B Female 35.5
Sample C Male 38.3
Sample D Male 31.6
Putamen
nTPM: 42.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 31.7
Sample A Female 46.0
Sample B Female 31.7
Sample C Male 51.7
Sample D Male 39.7
Septum
nTPM: 36.2
Samples: 4

Max nTPM: 45.9
Min nTPM: 29.7
Sample A Female 31.5
Sample B Female 29.7
Sample C Male 37.7
Sample D Male 45.9
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 45.5
Min nTPM: 26.1
Sample A Female 26.1
Sample B Female 45.5
Sample C Male 36.8
Sample D Male 32.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.0
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.2
Sample A Male 2.0
Sample B Male 2.4
Sample C Female 2.3
Sample D Female 1.2
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.4
Sample A Male 2.1
Sample B Male 1.6
Sample C Female 2.4
Sample D Female 1.4
Ventral forebrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.4
Sample A Male 3.7
Sample B Male 2.4
Sample C Female 3.7
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69782951 Antisense, RP_050505_04_A12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69782951 Antisense, RP_050505_04_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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