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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.6 nTPM
HPA:89.6 nTPM
GTEx:94.8 nTPM
FANTOM5:83.3 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:173.5 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 88.3
1857 Female, age 85, left hemisphere 91.9
1854 Male, age 80, left hemisphere 91.4
2846 Female, age 79, unknown 90.4
2290 Female, age 72, unknown 88.7
2288 Male, age 75, left hemisphere 87.4
2481 Female, age 94, left hemisphere 87.4
1781 Male, age 74, unknown 86.6
2289 Male, age 61, right hemisphere 83.1
Claustrum
nTPM: 86.1
2392 Female, age 94, both hemispheres 91.5
2491 Male, age 75, both hemispheres 89.2
1956 Male, age 74, unknown 87.3
2645 Female, age 72, unknown 86.4
2198 Male, age 80, both hemispheres 86.0
2284 Female, age 91, both hemispheres 85.8
2568 Male, age 61, both hemispheres 85.2
2196 Female, age 79, unknown 82.9
2292 Female, age 85, both hemispheres 80.8
Globus pallidus, externus
nTPM: 81.5
2395 Male, age 75, both hemispheres 86.6
2772 Female, age 79, unknown 83.6
1996 Male, age 80, right hemisphere 81.4
2567 Female, age 72, unknown 79.2
2646 Male, age 61, right hemisphere 76.8
Globus pallidus, internus
nTPM: 83.4
2287 Male, age 75, right hemisphere 87.2
1818 Male, age 74, unknown 85.3
2778 Female, age 91, both hemispheres 85.2
2483 Female, age 94, right hemisphere 84.8
2566 Female, age 72, unknown 81.7
2111 Female, age 85, right hemisphere 80.1
2037 Male, age 80, right hemisphere 79.5
Nucleus accumbens
nTPM: 87.4
1856 Female, age 91, right hemisphere 93.7
2824 Male, age 61, right hemisphere 89.8
1806 Female, age 85, left hemisphere 89.7
1783 Male, age 74, unknown 87.2
2391 Female, age 94, left hemisphere 86.6
2286 Male, age 75, left hemisphere 85.6
2698 Female, age 72, unknown 84.2
2732 Male, age 80, right hemisphere 82.2
Nucleus basalis of Meynert
nTPM: 82.8
2393 Male, age 80, right hemisphere 89.1
2484 Female, age 94, left hemisphere 84.3
2821 Male, age 75, both hemispheres 81.3
2569 Male, age 61, both hemispheres 76.5
Nucleus of the diagonal band
nTPM: 89.0
2775 Male, age 80, right hemisphere 92.3
1812 Female, age 91, both hemispheres 90.9
2195 Female, age 85, both hemispheres 90.5
2029 Male, age 61, right hemisphere 89.7
1979 Male, age 74, unknown 81.6
Olfactory tubercle
nTPM: 89.6
1846 Male, age 80, right hemisphere 91.5
1998 Female, age 91, both hemispheres 91.3
2856 Male, age 75, right hemisphere 88.3
2487 Female, age 94, left hemisphere 87.1
Putamen
nTPM: 87.5
1838 Male, age 80, right hemisphere 94.5
2466 Female, age 79, unknown 93.7
1937 Female, age 91, right hemisphere 88.6
1829 Male, age 74, unknown 87.5
2489 Female, age 72, unknown 84.5
2482 Female, age 94, left hemisphere 83.5
2647 Male, age 75, left hemisphere 80.2
Septal nuclei
nTPM: 85.5
2031 Female, age 72, unknown 91.3
2009 Female, age 91, both hemispheres 88.7
1960 Male, age 74, unknown 87.6
2629 Female, age 94, right hemisphere 86.0
2059 Female, age 85, both hemispheres 83.4
2199 Male, age 80, right hemisphere 81.3
2394 Male, age 61, left hemisphere 80.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 94.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 90.0
Samples: 246

Max nTPM: 214.8
Min nTPM: 49.1
Std nTPM: 25.0
Median nTPM: 85.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 214.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 203.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 192.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 192.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 188.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 164.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 147.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 144.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 136.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 135.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 94.8
Samples: 246

Max nTPM: 214.1
Min nTPM: 60.4
Std nTPM: 20.2
Median nTPM: 90.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 214.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 199.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 186.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 150.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 148.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 140.1
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 137.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 135.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 134.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 133.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 132.5
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Brain - Putamen (basal ganglia)
Average nTPM: 93.3
Samples: 205

Max nTPM: 183.0
Min nTPM: 53.4
Std nTPM: 20.9
Median nTPM: 88.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 183.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 174.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 147.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 145.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 144.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 144.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 139.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 138.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 137.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 135.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 132.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.9
FF:10164-103B2 76 years, female 59.9
Globus pallidus
Scaled Tags Per Million: 65.1
FF:10175-103C4 60 years, female 86.0
FF:10161-103A8 76 years, female 44.2
Nucleus accumbens
Scaled Tags Per Million: 54.7
FF:10037-101F1 23-56 years, mixed 54.7
Putamen
Scaled Tags Per Million: 83.3
FF:10176-103C5 60 years, female 83.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.1
Pig sample Sample description nTPM
Caudate
nTPM: 28.1
Samples: 4

Max nTPM: 29.6
Min nTPM: 26.5
Sample A Female 29.6
Sample B Female 26.5
Sample C Male 28.2
Sample D Male 28.2
Putamen
nTPM: 33.1
Samples: 4

Max nTPM: 45.6
Min nTPM: 27.9
Sample A Female 27.9
Sample B Female 29.2
Sample C Male 45.6
Sample D Male 29.8
Septum
nTPM: 27.7
Samples: 4

Max nTPM: 30.4
Min nTPM: 26.0
Sample A Female 30.4
Sample B Female 27.1
Sample C Male 26.0
Sample D Male 27.4
Ventral pallidum
nTPM: 26.9
Samples: 4

Max nTPM: 27.9
Min nTPM: 24.3
Sample A Female 27.9
Sample B Female 27.6
Sample C Male 27.8
Sample D Male 24.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 173.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 173.5
Samples: 4

Max nTPM: 185.7
Min nTPM: 167.5
Sample A Male 185.7
Sample B Male 168.5
Sample C Female 172.4
Sample D Female 167.5
Septum
nTPM: 146.8
Samples: 4

Max nTPM: 165.6
Min nTPM: 124.7
Sample A Male 124.7
Sample B Male 165.6
Sample C Female 153.8
Sample D Female 143.2
Ventral forebrain
nTPM: 168.1
Samples: 4

Max nTPM: 181.6
Min nTPM: 158.5
Sample A Male 158.5
Sample B Male 163.0
Sample C Female 181.6
Sample D Female 169.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
68744564 Antisense, RP_050208_01_B07, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.1
68744564 Antisense, RP_050208_01_B07, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.