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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		174.268
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:14.3 nTPM
FANTOM5:147.4 Scaled Tags Per Million
Pig:56.9 nTPM
Mouse:33.5 nTPM
Allen mouse:11.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030900
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA030900
Hippocampal formation mean intensity 174.268
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 105.983
Molecular layer of the dentate gyrus 121.345
Granular dentate gyrus 66.449
CA1 - oriens layer 164.546
CA1 - pyramidal layer 149.261
CA1 - radiatum layer 174.268
CA2 - oriens layer 141.841
CA2 - pyramidal layer 132.860
CA2 - radiatum layer 165.053
CA3 - oriens layer 124.130
CA3 - pyramidal layer 104.792
CA3 - radiatum layer 141.943
Stratum lucidum 123.604
Lacunosum moleculare 152.870
Subiculum 97.137

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Hippocampus
nTPM: 15.5
1855 Male, age 76, left hemisphere 22.2
1898 Male, age 80, left hemisphere 18.9
1911 Female, age 85, right hemisphere 17.0
2148 Female, age 91, left hemisphere 13.0
2529 Female, age 94, left hemisphere 11.1
2621 Female, age 67, right hemisphere 10.8
Dentate gyrus
nTPM: 15.8
1927 Female, age 91, both hemispheres 22.2
2246 Female, age 85, both hemispheres 20.6
2531 Female, age 67, both hemispheres 19.0
2010 Male, age 76, both hemispheres 14.4
2528 Male, age 74, both hemispheres 11.2
2530 Female, age 94, left hemisphere 7.3
Entorhinal gyrus
nTPM: 9.5
1938 Female, age 85, left hemisphere 15.3
2764 Male, age 80, right hemisphere 11.7
2117 Female, age 91, right hemisphere 9.6
1787 Male, age 76, left hemisphere 9.5
2686 Male, age 75, right hemisphere 5.6
2613 Female, age 94, left hemisphere 5.1
Hippocampus, CA1
nTPM: 21.3
2045 Male, age 76, both hemispheres 40.6
1873 Female, age 85, both hemispheres 22.3
2749 Male, age 80, left hemisphere 21.6
2527 Male, age 74, both hemispheres 13.4
2082 Female, age 91, right hemisphere 8.8
Hippocampus, CA2
nTPM: 13.4
1892 Male, age 76, both hemispheres 26.9
1940 Female, age 85, left hemisphere 14.8
2249 Male, age 74, both hemispheres 10.5
1963 Male, age 80, left hemisphere 9.8
2113 Female, age 91, right hemisphere 9.7
2437 Female, age 94, left hemisphere 9.0
Hippocampus, CA3
nTPM: 16.0
2137 Male, age 80, left hemisphere 21.3
1891 Female, age 85, both hemispheres 18.9
1867 Male, age 76, both hemispheres 18.8
2620 Female, age 94, left hemisphere 18.8
2861 Female, age 67, both hemispheres 11.1
2436 Male, age 74, both hemispheres 6.9
Parahippocampal cortex
nTPM: 12.6
1850 Male, age 80, both hemispheres 22.4
1933 Female, age 85, both hemispheres 20.1
2532 Female, age 72, left hemisphere 13.1
2245 Female, age 91, both hemispheres 12.7
2018 Male, age 76, both hemispheres 12.5
2693 Female, age 94, both hemispheres 12.1
2250 Female, age 67, right hemisphere 11.6
2692 Male, age 74, both hemispheres 8.6
1990 Female, age 91, right hemisphere 6.4
2622 Female, age 67, right hemisphere 6.3
Perirhinal gyrus
nTPM: 19.5
1841 Female, age 85, right hemisphere 22.1
1794 Male, age 80, right hemisphere 20.5
2521 Female, age 94, right hemisphere 20.2
1847 Female, age 91, left hemisphere 17.5
2848 Male, age 76, right hemisphere 17.3
Subiculum
nTPM: 13.1
2438 Female, age 94, left hemisphere 16.3
1901 Male, age 80, both hemispheres 15.6
1977 Female, age 85, both hemispheres 14.8
2042 Male, age 76, both hemispheres 13.5
2729 Female, age 91, right hemisphere 9.3
2619 Male, age 74, both hemispheres 9.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.3
Samples: 197

Max nTPM: 40.7
Min nTPM: 4.6
Std nTPM: 5.0
Median nTPM: 13.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 33.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 32.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 30.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 28.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 26.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 25.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 24.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 24.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 23.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 23.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 147.4
FF:10169-103B7 60 years, female 154.8
FF:10153-102I9 76 years, female 140.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 49.4
Min nTPM: 38.7
Sample A Female 49.1
Sample B Female 49.4
Sample C Male 38.7
Sample D Male 43.0
Entorhinal cortex
nTPM: 57.0
Samples: 4

Max nTPM: 63.2
Min nTPM: 50.8
Sample A Female 63.2
Sample B Female 62.3
Sample C Male 50.8
Sample D Male 51.5
Subiculum
nTPM: 40.4
Samples: 4

Max nTPM: 50.7
Min nTPM: 34.3
Sample A Female 38.6
Sample B Female 34.3
Sample C Male 37.8
Sample D Male 50.7
Ventral hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 52.1
Min nTPM: 41.4
Sample A Female 52.1
Sample B Female 45.1
Sample C Male 41.4
Sample D Male 41.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.5
Samples: 4

Max nTPM: 43.0
Min nTPM: 28.0
Sample A Male 31.7
Sample B Male 31.1
Sample C Female 28.0
Sample D Female 43.0
Hippocampal formation
nTPM: 22.4
Samples: 4

Max nTPM: 23.8
Min nTPM: 19.9
Sample A Male 23.1
Sample B Male 23.8
Sample C Female 22.8
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.2
683 Antisense, RP_Baylor_102923, Mouse strain C57BL/6J (56 days, male) 11.2
682 Antisense, RP_Baylor_102923, Mouse strain C57BL/6J (56 days, male) 9.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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