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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:3.4 nTPM
HPA:3.4 nTPM
GTEx:2.8 nTPM
FANTOM5:3.9 Scaled Tags Per Million
Pig:0.8 nTPM
Mouse:0.5 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023389Antibody HPA027762
Glial cells Not detectedLow
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.0
2289 Male, age 61, right hemisphere 2.5
1781 Male, age 74, unknown 2.2
2481 Female, age 94, left hemisphere 0.9
2288 Male, age 75, left hemisphere 0.7
2846 Female, age 79, unknown 0.6
1854 Male, age 80, left hemisphere 0.4
2290 Female, age 72, unknown 0.4
1857 Female, age 85, left hemisphere 0.1
Claustrum
nTPM: 3.2
2491 Male, age 75, both hemispheres 4.7
2284 Female, age 91, both hemispheres 3.8
2645 Female, age 72, unknown 3.7
2292 Female, age 85, both hemispheres 3.3
1956 Male, age 74, unknown 2.9
2568 Male, age 61, both hemispheres 2.9
2198 Male, age 80, both hemispheres 2.8
2392 Female, age 94, both hemispheres 2.6
2196 Female, age 79, unknown 2.3
Globus pallidus, externus
nTPM: 0.6
2772 Female, age 79, unknown 0.8
2395 Male, age 75, both hemispheres 0.7
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.6
1996 Male, age 80, right hemisphere 0.4
Globus pallidus, internus
nTPM: 0.6
2483 Female, age 94, right hemisphere 1.2
2287 Male, age 75, right hemisphere 0.8
2566 Female, age 72, unknown 0.7
1818 Male, age 74, unknown 0.5
2037 Male, age 80, right hemisphere 0.4
2778 Female, age 91, both hemispheres 0.4
2111 Female, age 85, right hemisphere 0.2
Nucleus accumbens
nTPM: 0.9
2732 Male, age 80, right hemisphere 2.8
2391 Female, age 94, left hemisphere 1.1
1783 Male, age 74, unknown 0.8
2286 Male, age 75, left hemisphere 0.7
1856 Female, age 91, right hemisphere 0.5
2824 Male, age 61, right hemisphere 0.5
1806 Female, age 85, left hemisphere 0.3
2698 Female, age 72, unknown 0.3
Nucleus basalis of Meynert
nTPM: 0.7
2484 Female, age 94, left hemisphere 1.2
2821 Male, age 75, both hemispheres 0.7
2569 Male, age 61, both hemispheres 0.6
2393 Male, age 80, right hemisphere 0.2
Nucleus of the diagonal band
nTPM: 3.2
2195 Female, age 85, both hemispheres 4.3
2029 Male, age 61, right hemisphere 3.9
2775 Male, age 80, right hemisphere 3.6
1812 Female, age 91, both hemispheres 3.1
1979 Male, age 74, unknown 1.3
Olfactory tubercle
nTPM: 3.3
1998 Female, age 91, both hemispheres 4.3
2856 Male, age 75, right hemisphere 3.6
2487 Female, age 94, left hemisphere 3.0
1846 Male, age 80, right hemisphere 2.3
Putamen
nTPM: 0.6
2482 Female, age 94, left hemisphere 1.2
2466 Female, age 79, unknown 0.7
1829 Male, age 74, unknown 0.5
1937 Female, age 91, right hemisphere 0.5
2647 Male, age 75, left hemisphere 0.5
1838 Male, age 80, right hemisphere 0.4
2489 Female, age 72, unknown 0.2
Septal nuclei
nTPM: 3.4
2009 Female, age 91, both hemispheres 4.8
2031 Female, age 72, unknown 4.7
1960 Male, age 74, unknown 4.5
2059 Female, age 85, both hemispheres 3.5
2629 Female, age 94, right hemisphere 3.5
2199 Male, age 80, right hemisphere 2.0
2394 Male, age 61, left hemisphere 0.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 23.1
Min nTPM: 0.1
Std nTPM: 3.8
Median nTPM: 1.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 23.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 22.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 21.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 20.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 17.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 17.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 16.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 14.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 11.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 10.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 18.0
Min nTPM: 0.1
Std nTPM: 2.7
Median nTPM: 1.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 18.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 17.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 17.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 16.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 14.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 13.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 12.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 11.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 11.2
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 8.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 5.6
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Brain - Putamen (basal ganglia)
Average nTPM: 1.2
Samples: 205

Max nTPM: 5.0
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 1.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 5.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 2.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 2.7
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 2.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 2.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 2.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 2.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 2.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 2.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.6
FF:10164-103B2 76 years, female 0.6
Globus pallidus
Scaled Tags Per Million: 0.7
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 3.9
FF:10037-101F1 23-56 years, mixed 3.9
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.8
Pig sample Sample description nTPM
Caudate
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.9
Putamen
nTPM: 0.8
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.5
Sample C Male 0.9
Sample D Male 0.9
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.1
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.3
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.4
Sample D Female 0.3
Ventral forebrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.4
Sample C Female 0.7
Sample D Female 0.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
671248 Antisense, RP_040914_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
671248 Antisense, RP_040914_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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