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VOPP1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.4 nTPM
HPA:51.4 nTPM
GTEx:38.4 nTPM
FANTOM5:20.4 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:65.0 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.4
2481 Female, age 94, left hemisphere 51.4
1857 Female, age 85, left hemisphere 47.5
1781 Male, age 74, unknown 46.3
2289 Male, age 61, right hemisphere 44.3
1854 Male, age 80, left hemisphere 42.9
2290 Female, age 72, unknown 42.1
2288 Male, age 75, left hemisphere 40.8
2846 Female, age 79, unknown 40.1
Claustrum
nTPM: 40.2
2491 Male, age 75, both hemispheres 44.5
2196 Female, age 79, unknown 43.7
2645 Female, age 72, unknown 42.0
2392 Female, age 94, both hemispheres 39.8
2284 Female, age 91, both hemispheres 39.6
2568 Male, age 61, both hemispheres 39.4
1956 Male, age 74, unknown 38.8
2198 Male, age 80, both hemispheres 38.4
2292 Female, age 85, both hemispheres 35.8
Globus pallidus, externus
nTPM: 51.4
2646 Male, age 61, right hemisphere 54.0
2395 Male, age 75, both hemispheres 53.3
1996 Male, age 80, right hemisphere 51.9
2772 Female, age 79, unknown 51.4
2567 Female, age 72, unknown 46.5
Globus pallidus, internus
nTPM: 48.7
2483 Female, age 94, right hemisphere 51.9
2037 Male, age 80, right hemisphere 50.9
2778 Female, age 91, both hemispheres 48.9
2287 Male, age 75, right hemisphere 48.6
2111 Female, age 85, right hemisphere 48.5
1818 Male, age 74, unknown 47.6
2566 Female, age 72, unknown 44.7
Nucleus accumbens
nTPM: 46.2
1806 Female, age 85, left hemisphere 48.6
2732 Male, age 80, right hemisphere 48.2
2698 Female, age 72, unknown 47.6
1856 Female, age 91, right hemisphere 47.0
2824 Male, age 61, right hemisphere 46.5
1783 Male, age 74, unknown 45.2
2286 Male, age 75, left hemisphere 44.2
2391 Female, age 94, left hemisphere 42.4
Nucleus basalis of Meynert
nTPM: 46.9
2569 Male, age 61, both hemispheres 54.0
2821 Male, age 75, both hemispheres 45.8
2484 Female, age 94, left hemisphere 44.2
2393 Male, age 80, right hemisphere 43.5
Nucleus of the diagonal band
nTPM: 50.9
1979 Male, age 74, unknown 57.0
1812 Female, age 91, both hemispheres 53.2
2029 Male, age 61, right hemisphere 49.0
2775 Male, age 80, right hemisphere 47.7
2195 Female, age 85, both hemispheres 47.6
Olfactory tubercle
nTPM: 47.9
1846 Male, age 80, right hemisphere 50.9
1998 Female, age 91, both hemispheres 47.9
2856 Male, age 75, right hemisphere 47.2
2487 Female, age 94, left hemisphere 45.8
Putamen
nTPM: 43.6
2647 Male, age 75, left hemisphere 53.2
2482 Female, age 94, left hemisphere 48.1
2489 Female, age 72, unknown 41.9
2466 Female, age 79, unknown 41.4
1838 Male, age 80, right hemisphere 41.0
1937 Female, age 91, right hemisphere 40.9
1829 Male, age 74, unknown 38.9
Septal nuclei
nTPM: 50.6
2031 Female, age 72, unknown 54.5
2059 Female, age 85, both hemispheres 53.6
2394 Male, age 61, left hemisphere 52.3
2009 Female, age 91, both hemispheres 50.8
1960 Male, age 74, unknown 49.2
2199 Male, age 80, right hemisphere 48.0
2629 Female, age 94, right hemisphere 45.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.2
Samples: 246

Max nTPM: 55.9
Min nTPM: 21.2
Std nTPM: 6.8
Median nTPM: 31.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 55.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 54.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 53.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 51.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 51.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 49.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 48.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 48.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 48.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 47.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.4
Samples: 246

Max nTPM: 54.7
Min nTPM: 24.2
Std nTPM: 5.8
Median nTPM: 38.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 54.7
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 54.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 53.2
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 50.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 50.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 50.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 49.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 49.1
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 49.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 49.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 48.9
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Brain - Putamen (basal ganglia)
Average nTPM: 34.4
Samples: 205

Max nTPM: 58.3
Min nTPM: 18.7
Std nTPM: 7.5
Median nTPM: 32.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 58.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 56.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 55.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 54.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 54.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 52.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 52.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 49.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 49.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 49.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 49.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.8
FF:10164-103B2 76 years, female 18.8
Globus pallidus
Scaled Tags Per Million: 12.1
FF:10161-103A8 76 years, female 13.1
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 15.1
FF:10037-101F1 23-56 years, mixed 15.1
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Caudate
nTPM: 18.8
Samples: 4

Max nTPM: 22.1
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 22.1
Sample C Male 21.4
Sample D Male 17.0
Putamen
nTPM: 15.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 14.4
Sample C Male 16.7
Sample D Male 17.6
Septum
nTPM: 19.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 13.3
Sample A Female 19.7
Sample B Female 23.2
Sample C Male 22.2
Sample D Male 13.3
Ventral pallidum
nTPM: 20.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 20.1
Sample C Male 26.3
Sample D Male 17.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 65.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.4
Samples: 4

Max nTPM: 66.1
Min nTPM: 43.5
Sample A Male 44.0
Sample B Male 43.5
Sample C Female 63.9
Sample D Female 66.1
Septum
nTPM: 65.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 62.0
Sample A Male 62.0
Sample B Male 71.6
Sample C Female 63.0
Sample D Female 63.4
Ventral forebrain
nTPM: 62.9
Samples: 4

Max nTPM: 69.5
Min nTPM: 57.2
Sample A Male 61.2
Sample B Male 57.2
Sample C Female 63.8
Sample D Female 69.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68157389 Antisense, RP_041116_02_C12, Mouse strain C57BL/6J (56 days, male) 0.8
70928373 Antisense, RP_050725_02_D10, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.2
68157389 Antisense, RP_041116_02_C12, Mouse strain C57BL/6J (56 days, male) 0.3
70928373 Antisense, RP_050725_02_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.