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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:4.7 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:22.0 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.7
1781 Male, age 74, unknown 6.7
2846 Female, age 79, unknown 5.4
2290 Female, age 72, unknown 4.8
1857 Female, age 85, left hemisphere 4.4
1854 Male, age 80, left hemisphere 4.3
2288 Male, age 75, left hemisphere 4.3
2289 Male, age 61, right hemisphere 3.8
2481 Female, age 94, left hemisphere 3.7
Claustrum
nTPM: 6.0
1956 Male, age 74, unknown 8.2
2645 Female, age 72, unknown 7.6
2196 Female, age 79, unknown 7.2
2292 Female, age 85, both hemispheres 5.8
2198 Male, age 80, both hemispheres 5.7
2392 Female, age 94, both hemispheres 5.3
2284 Female, age 91, both hemispheres 5.2
2491 Male, age 75, both hemispheres 5.1
2568 Male, age 61, both hemispheres 4.1
Globus pallidus, externus
nTPM: 4.3
2395 Male, age 75, both hemispheres 5.5
1996 Male, age 80, right hemisphere 4.3
2567 Female, age 72, unknown 4.0
2646 Male, age 61, right hemisphere 4.0
2772 Female, age 79, unknown 3.9
Globus pallidus, internus
nTPM: 4.1
2287 Male, age 75, right hemisphere 4.9
2778 Female, age 91, both hemispheres 4.6
2037 Male, age 80, right hemisphere 4.3
2111 Female, age 85, right hemisphere 4.0
2566 Female, age 72, unknown 4.0
2483 Female, age 94, right hemisphere 3.6
1818 Male, age 74, unknown 3.3
Nucleus accumbens
nTPM: 3.9
2698 Female, age 72, unknown 4.6
2732 Male, age 80, right hemisphere 4.6
2286 Male, age 75, left hemisphere 4.4
1783 Male, age 74, unknown 4.2
1806 Female, age 85, left hemisphere 4.1
1856 Female, age 91, right hemisphere 3.7
2391 Female, age 94, left hemisphere 3.2
2824 Male, age 61, right hemisphere 2.7
Nucleus basalis of Meynert
nTPM: 4.7
2821 Male, age 75, both hemispheres 5.9
2393 Male, age 80, right hemisphere 4.5
2569 Male, age 61, both hemispheres 4.3
2484 Female, age 94, left hemisphere 4.2
Nucleus of the diagonal band
nTPM: 6.3
2195 Female, age 85, both hemispheres 8.3
2775 Male, age 80, right hemisphere 7.0
1812 Female, age 91, both hemispheres 6.7
2029 Male, age 61, right hemisphere 4.8
1979 Male, age 74, unknown 4.5
Olfactory tubercle
nTPM: 5.8
1846 Male, age 80, right hemisphere 6.7
2487 Female, age 94, left hemisphere 6.1
1998 Female, age 91, both hemispheres 5.5
2856 Male, age 75, right hemisphere 4.9
Putamen
nTPM: 4.4
2647 Male, age 75, left hemisphere 5.1
2466 Female, age 79, unknown 5.0
2489 Female, age 72, unknown 5.0
1829 Male, age 74, unknown 4.1
1937 Female, age 91, right hemisphere 4.0
2482 Female, age 94, left hemisphere 4.0
1838 Male, age 80, right hemisphere 3.6
Septal nuclei
nTPM: 7.2
1960 Male, age 74, unknown 12.5
2031 Female, age 72, unknown 9.6
2629 Female, age 94, right hemisphere 6.9
2009 Female, age 91, both hemispheres 6.2
2059 Female, age 85, both hemispheres 5.7
2199 Male, age 80, right hemisphere 5.2
2394 Male, age 61, left hemisphere 4.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.7
Samples: 246

Max nTPM: 28.9
Min nTPM: 1.1
Std nTPM: 3.3
Median nTPM: 3.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 28.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 23.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 16.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 16.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 16.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 15.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 13.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 12.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 12.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 10.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 20.9
Min nTPM: 1.1
Std nTPM: 2.6
Median nTPM: 2.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 20.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 15.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 14.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 14.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 12.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 11.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 10.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 10.2
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 10.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 10.1
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 9.9
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Brain - Putamen (basal ganglia)
Average nTPM: 4.6
Samples: 205

Max nTPM: 23.2
Min nTPM: 1.2
Std nTPM: 3.1
Median nTPM: 3.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 23.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 22.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 17.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 16.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 16.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 14.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 12.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 12.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 10.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 9.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 9.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.8
FF:10164-103B2 76 years, female 8.8
Globus pallidus
Scaled Tags Per Million: 18.2
FF:10161-103A8 76 years, female 18.2
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 22.5
FF:10037-101F1 23-56 years, mixed 22.5
Putamen
Scaled Tags Per Million: 15.6
FF:10176-103C5 60 years, female 15.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.2
Pig sample Sample description nTPM
Caudate
nTPM: 11.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.9
Sample A Female 12.5
Sample B Female 12.2
Sample C Male 11.7
Sample D Male 7.9
Putamen
nTPM: 10.4
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.0
Sample A Female 12.0
Sample B Female 9.7
Sample C Male 9.0
Sample D Male 10.8
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 16.2
Min nTPM: 9.9
Sample A Female 16.2
Sample B Female 9.9
Sample C Male 12.6
Sample D Male 10.0
Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.3
Sample A Female 14.0
Sample B Female 11.2
Sample C Male 9.3
Sample D Male 11.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.0
Samples: 4

Max nTPM: 25.2
Min nTPM: 18.0
Sample A Male 18.0
Sample B Male 20.6
Sample C Female 25.2
Sample D Female 24.3
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 17.6
Min nTPM: 6.4
Sample A Male 17.6
Sample B Male 11.9
Sample C Female 7.8
Sample D Female 6.4
Ventral forebrain
nTPM: 19.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 16.6
Sample A Male 21.0
Sample B Male 17.1
Sample C Female 16.6
Sample D Female 22.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
67978499 Antisense, RP_040923_01_D02, Mouse strain C57BL/6J (56 days, male) 1.1
70744519 Antisense, RP_050725_02_B12, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.1
70744519 Antisense, RP_050725_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1
67978499 Antisense, RP_040923_01_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.