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GRAMD2B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:57.1 nTPM
HPA:57.1 nTPM
GTEx:45.6 nTPM
FANTOM5:160.7 Scaled Tags Per Million
Pig:53.0 nTPM
Mouse:19.1 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA009678Antibody HPA010095
Glial cells LowNot detected
Neuronal cells MediumLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 49.3
2481 Female, age 94, left hemisphere 73.1
2289 Male, age 61, right hemisphere 57.0
2288 Male, age 75, left hemisphere 51.1
1857 Female, age 85, left hemisphere 47.7
2290 Female, age 72, unknown 47.1
1854 Male, age 80, left hemisphere 44.5
1781 Male, age 74, unknown 37.3
2846 Female, age 79, unknown 36.9
Claustrum
nTPM: 37.4
1956 Male, age 74, unknown 41.9
2392 Female, age 94, both hemispheres 40.1
2491 Male, age 75, both hemispheres 40.1
2568 Male, age 61, both hemispheres 37.5
2196 Female, age 79, unknown 36.8
2645 Female, age 72, unknown 36.0
2198 Male, age 80, both hemispheres 35.6
2284 Female, age 91, both hemispheres 34.8
2292 Female, age 85, both hemispheres 34.0
Globus pallidus, externus
nTPM: 57.1
2646 Male, age 61, right hemisphere 69.9
1996 Male, age 80, right hemisphere 68.0
2567 Female, age 72, unknown 53.6
2772 Female, age 79, unknown 52.4
2395 Male, age 75, both hemispheres 41.3
Globus pallidus, internus
nTPM: 53.7
2483 Female, age 94, right hemisphere 62.6
2037 Male, age 80, right hemisphere 61.9
1818 Male, age 74, unknown 55.9
2778 Female, age 91, both hemispheres 50.0
2111 Female, age 85, right hemisphere 49.9
2287 Male, age 75, right hemisphere 48.4
2566 Female, age 72, unknown 46.9
Nucleus accumbens
nTPM: 45.2
2391 Female, age 94, left hemisphere 53.7
2286 Male, age 75, left hemisphere 52.5
2824 Male, age 61, right hemisphere 47.7
1806 Female, age 85, left hemisphere 47.4
2732 Male, age 80, right hemisphere 45.8
2698 Female, age 72, unknown 42.3
1856 Female, age 91, right hemisphere 36.5
1783 Male, age 74, unknown 35.6
Nucleus basalis of Meynert
nTPM: 50.3
2569 Male, age 61, both hemispheres 76.9
2393 Male, age 80, right hemisphere 46.0
2484 Female, age 94, left hemisphere 40.7
2821 Male, age 75, both hemispheres 37.6
Nucleus of the diagonal band
nTPM: 38.5
1979 Male, age 74, unknown 41.5
1812 Female, age 91, both hemispheres 41.3
2775 Male, age 80, right hemisphere 37.3
2029 Male, age 61, right hemisphere 36.4
2195 Female, age 85, both hemispheres 35.9
Olfactory tubercle
nTPM: 41.1
1846 Male, age 80, right hemisphere 47.3
2856 Male, age 75, right hemisphere 43.7
2487 Female, age 94, left hemisphere 38.1
1998 Female, age 91, both hemispheres 35.3
Putamen
nTPM: 45.8
2482 Female, age 94, left hemisphere 53.5
2647 Male, age 75, left hemisphere 50.6
1829 Male, age 74, unknown 48.6
2489 Female, age 72, unknown 46.6
1937 Female, age 91, right hemisphere 41.6
1838 Male, age 80, right hemisphere 41.2
2466 Female, age 79, unknown 38.6
Septal nuclei
nTPM: 42.1
2199 Male, age 80, right hemisphere 55.1
2009 Female, age 91, both hemispheres 46.2
2059 Female, age 85, both hemispheres 43.7
2629 Female, age 94, right hemisphere 42.2
2394 Male, age 61, left hemisphere 41.4
2031 Female, age 72, unknown 34.3
1960 Male, age 74, unknown 31.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.6
Samples: 246

Max nTPM: 145.0
Min nTPM: 10.2
Std nTPM: 18.5
Median nTPM: 42.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 145.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 134.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 85.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 85.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 81.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 81.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 78.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 78.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.2
Samples: 246

Max nTPM: 141.9
Min nTPM: 8.0
Std nTPM: 16.3
Median nTPM: 31.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 141.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 97.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 90.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 79.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 73.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 72.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 72.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 71.5
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 70.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 70.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 69.0
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Brain - Putamen (basal ganglia)
Average nTPM: 42.7
Samples: 205

Max nTPM: 120.0
Min nTPM: 10.3
Std nTPM: 17.4
Median nTPM: 39.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 120.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 94.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 87.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 85.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 83.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 82.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 74.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 73.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 73.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 73.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 70.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.8
FF:10164-103B2 76 years, female 122.8
Globus pallidus
Scaled Tags Per Million: 160.7
FF:10175-103C4 60 years, female 191.8
FF:10161-103A8 76 years, female 129.7
Nucleus accumbens
Scaled Tags Per Million: 127.5
FF:10037-101F1 23-56 years, mixed 127.5
Putamen
Scaled Tags Per Million: 110.1
FF:10176-103C5 60 years, female 110.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.0
Pig sample Sample description nTPM
Caudate
nTPM: 39.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 35.2
Sample A Female 35.2
Sample B Female 42.2
Sample C Male 41.9
Sample D Male 38.0
Putamen
nTPM: 53.0
Samples: 4

Max nTPM: 63.6
Min nTPM: 41.1
Sample A Female 63.6
Sample B Female 41.1
Sample C Male 55.1
Sample D Male 52.3
Septum
nTPM: 44.8
Samples: 4

Max nTPM: 55.1
Min nTPM: 40.6
Sample A Female 40.6
Sample B Female 41.5
Sample C Male 41.8
Sample D Male 55.1
Ventral pallidum
nTPM: 49.9
Samples: 4

Max nTPM: 58.6
Min nTPM: 35.7
Sample A Female 35.7
Sample B Female 51.1
Sample C Male 54.0
Sample D Male 58.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.1
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.8
Sample A Male 15.8
Sample B Male 17.5
Sample C Female 21.7
Sample D Female 21.4
Septum
nTPM: 16.9
Samples: 4

Max nTPM: 20.7
Min nTPM: 13.5
Sample A Male 13.5
Sample B Male 17.4
Sample C Female 15.8
Sample D Female 20.7
Ventral forebrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.0
Sample A Male 17.9
Sample B Male 13.0
Sample C Female 14.5
Sample D Female 15.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70919967 Antisense, RP_050713_02_D10, Mouse strain C57BL/6J (56 days, male) 0.3
74988591 Antisense, RP_060315_05_F04, Mouse strain C57BL/6J (56 days, male) 0.2
70528133 Antisense, RP_050623_01_H06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
74988591 Antisense, RP_060315_05_F04, Mouse strain C57BL/6J (56 days, male) 0.3
70919967 Antisense, RP_050713_02_D10, Mouse strain C57BL/6J (56 days, male) 0.2
70528133 Antisense, RP_050623_01_H06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.