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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:41.9 nTPM
FANTOM5:86.0 Scaled Tags Per Million
Pig:81.6 nTPM
Mouse:29.9 nTPM
Allen mouse:4.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051397Antibody HPA054819
Glial cells LowNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Hippocampus
nTPM: 30.1
2621 Female, age 67, right hemisphere 50.3
1855 Male, age 76, left hemisphere 31.8
2148 Female, age 91, left hemisphere 30.8
1898 Male, age 80, left hemisphere 30.3
2529 Female, age 94, left hemisphere 19.4
1911 Female, age 85, right hemisphere 18.1
Dentate gyrus
nTPM: 29.2
2531 Female, age 67, both hemispheres 39.1
2530 Female, age 94, left hemisphere 32.1
2246 Female, age 85, both hemispheres 30.7
1927 Female, age 91, both hemispheres 29.2
2010 Male, age 76, both hemispheres 25.2
2528 Male, age 74, both hemispheres 18.6
Entorhinal gyrus
nTPM: 30.0
2613 Female, age 94, left hemisphere 52.2
2764 Male, age 80, right hemisphere 34.0
1938 Female, age 85, left hemisphere 28.8
1787 Male, age 76, left hemisphere 28.1
2686 Male, age 75, right hemisphere 23.6
2117 Female, age 91, right hemisphere 13.2
Hippocampus, CA1
nTPM: 31.3
2749 Male, age 80, left hemisphere 57.3
1873 Female, age 85, both hemispheres 32.9
2527 Male, age 74, both hemispheres 28.3
2045 Male, age 76, both hemispheres 21.3
2082 Female, age 91, right hemisphere 16.7
Hippocampus, CA2
nTPM: 23.1
1963 Male, age 80, left hemisphere 37.6
1892 Male, age 76, both hemispheres 36.8
2437 Female, age 94, left hemisphere 21.9
1940 Female, age 85, left hemisphere 20.0
2113 Female, age 91, right hemisphere 13.2
2249 Male, age 74, both hemispheres 9.1
Hippocampus, CA3
nTPM: 34.3
2861 Female, age 67, both hemispheres 55.7
2620 Female, age 94, left hemisphere 47.8
2137 Male, age 80, left hemisphere 38.0
1867 Male, age 76, both hemispheres 21.8
2436 Male, age 74, both hemispheres 21.4
1891 Female, age 85, both hemispheres 20.8
Parahippocampal cortex
nTPM: 29.5
2245 Female, age 91, both hemispheres 41.5
2622 Female, age 67, right hemisphere 39.9
2532 Female, age 72, left hemisphere 34.1
2692 Male, age 74, both hemispheres 31.3
2693 Female, age 94, both hemispheres 30.0
1933 Female, age 85, both hemispheres 27.5
1850 Male, age 80, both hemispheres 27.0
2250 Female, age 67, right hemisphere 25.3
1990 Female, age 91, right hemisphere 22.2
2018 Male, age 76, both hemispheres 16.8
Perirhinal gyrus
nTPM: 29.6
1847 Female, age 91, left hemisphere 32.4
1794 Male, age 80, right hemisphere 31.4
2521 Female, age 94, right hemisphere 31.3
2848 Male, age 76, right hemisphere 31.0
1841 Female, age 85, right hemisphere 21.8
Subiculum
nTPM: 26.1
2438 Female, age 94, left hemisphere 50.8
2619 Male, age 74, both hemispheres 29.4
1977 Female, age 85, both hemispheres 23.1
1901 Male, age 80, both hemispheres 22.2
2042 Male, age 76, both hemispheres 16.4
2729 Female, age 91, right hemisphere 14.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.9
Samples: 197

Max nTPM: 73.8
Min nTPM: 20.5
Std nTPM: 10.2
Median nTPM: 39.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 73.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 72.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 72.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 69.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 68.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 67.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 65.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 65.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 65.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 63.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 59.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 86.0
FF:10153-102I9 76 years, female 95.7
FF:10169-103B7 60 years, female 76.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 81.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 78.7
Samples: 4

Max nTPM: 98.4
Min nTPM: 57.6
Sample A Female 98.4
Sample B Female 83.9
Sample C Male 74.9
Sample D Male 57.6
Entorhinal cortex
nTPM: 80.6
Samples: 4

Max nTPM: 92.7
Min nTPM: 70.3
Sample A Female 92.7
Sample B Female 70.3
Sample C Male 81.5
Sample D Male 77.7
Subiculum
nTPM: 81.4
Samples: 4

Max nTPM: 102.1
Min nTPM: 71.0
Sample A Female 102.1
Sample B Female 71.0
Sample C Male 80.4
Sample D Male 72.0
Ventral hippocampus
nTPM: 81.6
Samples: 4

Max nTPM: 101.9
Min nTPM: 54.6
Sample A Female 84.9
Sample B Female 54.6
Sample C Male 101.9
Sample D Male 85.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 37.4
Min nTPM: 27.0
Sample A Male 27.7
Sample B Male 27.0
Sample C Female 27.4
Sample D Female 37.4
Hippocampal formation
nTPM: 28.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.5
Sample A Male 23.5
Sample B Male 31.4
Sample C Female 32.2
Sample D Female 25.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
68666894 Antisense, RP_050201_01_B11, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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