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MTERF3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:14.2 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:19.2 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.8
2481 Female, age 94, left hemisphere 18.0
1854 Male, age 80, left hemisphere 17.1
2288 Male, age 75, left hemisphere 17.1
2846 Female, age 79, unknown 17.0
2290 Female, age 72, unknown 16.8
1857 Female, age 85, left hemisphere 16.6
1781 Male, age 74, unknown 16.0
2289 Male, age 61, right hemisphere 15.7
Claustrum
nTPM: 15.9
2392 Female, age 94, both hemispheres 18.0
2196 Female, age 79, unknown 16.5
2491 Male, age 75, both hemispheres 16.1
2645 Female, age 72, unknown 15.8
2198 Male, age 80, both hemispheres 15.7
2284 Female, age 91, both hemispheres 15.7
1956 Male, age 74, unknown 15.3
2292 Female, age 85, both hemispheres 15.3
2568 Male, age 61, both hemispheres 15.0
Globus pallidus, externus
nTPM: 15.8
2395 Male, age 75, both hemispheres 16.8
1996 Male, age 80, right hemisphere 16.4
2567 Female, age 72, unknown 15.9
2772 Female, age 79, unknown 15.8
2646 Male, age 61, right hemisphere 14.4
Globus pallidus, internus
nTPM: 16.6
2287 Male, age 75, right hemisphere 17.7
2111 Female, age 85, right hemisphere 17.2
2483 Female, age 94, right hemisphere 16.7
2778 Female, age 91, both hemispheres 16.6
1818 Male, age 74, unknown 16.5
2037 Male, age 80, right hemisphere 15.9
2566 Female, age 72, unknown 15.7
Nucleus accumbens
nTPM: 16.6
2286 Male, age 75, left hemisphere 17.3
2824 Male, age 61, right hemisphere 17.2
1806 Female, age 85, left hemisphere 17.0
2698 Female, age 72, unknown 16.9
1856 Female, age 91, right hemisphere 16.8
1783 Male, age 74, unknown 16.4
2732 Male, age 80, right hemisphere 15.8
2391 Female, age 94, left hemisphere 15.7
Nucleus basalis of Meynert
nTPM: 15.4
2393 Male, age 80, right hemisphere 16.4
2484 Female, age 94, left hemisphere 16.4
2821 Male, age 75, both hemispheres 14.9
2569 Male, age 61, both hemispheres 14.0
Nucleus of the diagonal band
nTPM: 16.0
1979 Male, age 74, unknown 17.7
2775 Male, age 80, right hemisphere 16.2
1812 Female, age 91, both hemispheres 15.8
2195 Female, age 85, both hemispheres 15.7
2029 Male, age 61, right hemisphere 14.5
Olfactory tubercle
nTPM: 16.1
2856 Male, age 75, right hemisphere 16.5
2487 Female, age 94, left hemisphere 16.4
1846 Male, age 80, right hemisphere 15.9
1998 Female, age 91, both hemispheres 15.8
Putamen
nTPM: 16.9
2466 Female, age 79, unknown 18.1
1829 Male, age 74, unknown 17.4
2482 Female, age 94, left hemisphere 17.2
1937 Female, age 91, right hemisphere 17.1
1838 Male, age 80, right hemisphere 17.0
2489 Female, age 72, unknown 16.3
2647 Male, age 75, left hemisphere 14.9
Septal nuclei
nTPM: 16.1
2031 Female, age 72, unknown 17.0
2394 Male, age 61, left hemisphere 16.3
2059 Female, age 85, both hemispheres 16.2
1960 Male, age 74, unknown 15.9
2199 Male, age 80, right hemisphere 15.7
2629 Female, age 94, right hemisphere 15.7
2009 Female, age 91, both hemispheres 15.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.0
Samples: 246

Max nTPM: 29.1
Min nTPM: 6.7
Std nTPM: 2.7
Median nTPM: 13.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 21.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 21.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 20.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 20.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 20.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 19.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 19.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 19.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 19.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.9
Samples: 246

Max nTPM: 25.1
Min nTPM: 7.7
Std nTPM: 2.8
Median nTPM: 13.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 25.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 25.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 22.9
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 22.8
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 21.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 21.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 19.8
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 19.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 19.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 19.4
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 18.9
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Brain - Putamen (basal ganglia)
Average nTPM: 14.2
Samples: 205

Max nTPM: 20.7
Min nTPM: 6.5
Std nTPM: 2.4
Median nTPM: 14.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 20.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 19.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 19.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 19.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 19.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 18.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 18.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 18.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 18.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 18.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.3
FF:10164-103B2 76 years, female 11.3
Globus pallidus
Scaled Tags Per Million: 18.5
FF:10175-103C4 60 years, female 25.2
FF:10161-103A8 76 years, female 11.9
Nucleus accumbens
Scaled Tags Per Million: 11.0
FF:10037-101F1 23-56 years, mixed 11.0
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.9
Pig sample Sample description nTPM
Caudate
nTPM: 38.1
Samples: 4

Max nTPM: 42.1
Min nTPM: 32.4
Sample A Female 38.5
Sample B Female 39.2
Sample C Male 42.1
Sample D Male 32.4
Putamen
nTPM: 45.9
Samples: 4

Max nTPM: 56.1
Min nTPM: 39.1
Sample A Female 43.6
Sample B Female 44.6
Sample C Male 56.1
Sample D Male 39.1
Septum
nTPM: 40.1
Samples: 4

Max nTPM: 44.6
Min nTPM: 35.2
Sample A Female 44.6
Sample B Female 43.9
Sample C Male 36.5
Sample D Male 35.2
Ventral pallidum
nTPM: 40.2
Samples: 4

Max nTPM: 51.4
Min nTPM: 34.2
Sample A Female 40.8
Sample B Female 51.4
Sample C Male 34.2
Sample D Male 34.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.5
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.6
Sample A Male 18.9
Sample B Male 19.5
Sample C Female 15.6
Sample D Female 15.8
Septum
nTPM: 16.6
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.3
Sample A Male 13.3
Sample B Male 18.6
Sample C Female 16.4
Sample D Female 18.1
Ventral forebrain
nTPM: 19.2
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.7
Sample A Male 19.4
Sample B Male 17.7
Sample C Female 18.8
Sample D Female 21.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
74357595 Antisense, RP_060117_01_A10, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.0
74357595 Antisense, RP_060117_01_A10, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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