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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:16.9 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:60.7 nTPM
Allen mouse:4.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.3
2289 Male, age 61, right hemisphere 13.1
1857 Female, age 85, left hemisphere 12.4
1854 Male, age 80, left hemisphere 11.8
2288 Male, age 75, left hemisphere 11.2
2290 Female, age 72, unknown 11.1
1781 Male, age 74, unknown 10.9
2846 Female, age 79, unknown 10.7
2481 Female, age 94, left hemisphere 8.9
Claustrum
nTPM: 12.5
2491 Male, age 75, both hemispheres 15.4
2645 Female, age 72, unknown 14.5
2198 Male, age 80, both hemispheres 13.6
2568 Male, age 61, both hemispheres 13.6
2284 Female, age 91, both hemispheres 12.8
2392 Female, age 94, both hemispheres 11.5
1956 Male, age 74, unknown 10.7
2196 Female, age 79, unknown 10.4
2292 Female, age 85, both hemispheres 9.9
Globus pallidus, externus
nTPM: 7.9
2772 Female, age 79, unknown 8.5
2646 Male, age 61, right hemisphere 8.1
2567 Female, age 72, unknown 8.0
2395 Male, age 75, both hemispheres 7.9
1996 Male, age 80, right hemisphere 6.7
Globus pallidus, internus
nTPM: 7.2
1818 Male, age 74, unknown 8.0
2483 Female, age 94, right hemisphere 8.0
2566 Female, age 72, unknown 8.0
2287 Male, age 75, right hemisphere 7.4
2037 Male, age 80, right hemisphere 6.6
2111 Female, age 85, right hemisphere 6.3
2778 Female, age 91, both hemispheres 6.1
Nucleus accumbens
nTPM: 12.3
2824 Male, age 61, right hemisphere 16.3
1856 Female, age 91, right hemisphere 16.2
1783 Male, age 74, unknown 13.1
1806 Female, age 85, left hemisphere 11.8
2732 Male, age 80, right hemisphere 11.5
2286 Male, age 75, left hemisphere 11.3
2698 Female, age 72, unknown 10.2
2391 Female, age 94, left hemisphere 7.7
Nucleus basalis of Meynert
nTPM: 10.7
2393 Male, age 80, right hemisphere 11.4
2484 Female, age 94, left hemisphere 11.0
2821 Male, age 75, both hemispheres 11.0
2569 Male, age 61, both hemispheres 9.4
Nucleus of the diagonal band
nTPM: 18.1
2775 Male, age 80, right hemisphere 20.2
2195 Female, age 85, both hemispheres 19.8
2029 Male, age 61, right hemisphere 19.3
1812 Female, age 91, both hemispheres 16.7
1979 Male, age 74, unknown 14.6
Olfactory tubercle
nTPM: 16.3
1998 Female, age 91, both hemispheres 17.2
1846 Male, age 80, right hemisphere 16.8
2487 Female, age 94, left hemisphere 16.8
2856 Male, age 75, right hemisphere 14.3
Putamen
nTPM: 11.6
2647 Male, age 75, left hemisphere 13.3
1838 Male, age 80, right hemisphere 12.7
1937 Female, age 91, right hemisphere 12.1
2466 Female, age 79, unknown 12.0
2489 Female, age 72, unknown 11.4
1829 Male, age 74, unknown 10.5
2482 Female, age 94, left hemisphere 8.8
Septal nuclei
nTPM: 16.7
1960 Male, age 74, unknown 25.1
2059 Female, age 85, both hemispheres 18.6
2031 Female, age 72, unknown 18.0
2009 Female, age 91, both hemispheres 17.1
2629 Female, age 94, right hemisphere 14.0
2394 Male, age 61, left hemisphere 13.2
2199 Male, age 80, right hemisphere 11.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 34.2
Min nTPM: 3.6
Std nTPM: 4.3
Median nTPM: 12.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 34.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 25.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 25.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 24.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 23.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 22.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 22.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 21.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 21.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 20.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 20.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 35.4
Min nTPM: 2.5
Std nTPM: 6.2
Median nTPM: 16.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 35.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 34.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 33.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 32.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 32.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 29.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 29.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 29.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 29.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 29.0
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 28.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 25.3
Min nTPM: 3.2
Std nTPM: 4.4
Median nTPM: 12.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 25.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 24.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 23.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 23.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 22.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 21.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 21.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 21.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 20.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 20.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 20.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.9
FF:10164-103B2 76 years, female 24.9
Globus pallidus
Scaled Tags Per Million: 2.8
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.5
Nucleus accumbens
Scaled Tags Per Million: 18.9
FF:10037-101F1 23-56 years, mixed 18.9
Putamen
Scaled Tags Per Million: 19.8
FF:10176-103C5 60 years, female 19.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 56.0
Pig sample Sample description nTPM
Caudate
nTPM: 36.8
Samples: 4

Max nTPM: 40.4
Min nTPM: 31.7
Sample A Female 31.7
Sample B Female 36.9
Sample C Male 40.4
Sample D Male 38.1
Putamen
nTPM: 56.1
Samples: 4

Max nTPM: 75.8
Min nTPM: 35.8
Sample A Female 75.8
Sample B Female 35.8
Sample C Male 46.2
Sample D Male 66.4
Septum
nTPM: 45.8
Samples: 4

Max nTPM: 51.0
Min nTPM: 41.7
Sample A Female 47.1
Sample B Female 43.5
Sample C Male 41.7
Sample D Male 51.0
Ventral pallidum
nTPM: 51.3
Samples: 4

Max nTPM: 64.3
Min nTPM: 32.7
Sample A Female 32.7
Sample B Female 47.1
Sample C Male 61.2
Sample D Male 64.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.1
Samples: 4

Max nTPM: 61.2
Min nTPM: 51.6
Sample A Male 51.6
Sample B Male 53.4
Sample C Female 61.2
Sample D Female 58.0
Septum
nTPM: 22.2
Samples: 4

Max nTPM: 33.0
Min nTPM: 17.1
Sample A Male 33.0
Sample B Male 17.2
Sample C Female 21.6
Sample D Female 17.1
Ventral forebrain
nTPM: 60.7
Samples: 4

Max nTPM: 64.6
Min nTPM: 53.7
Sample A Male 61.8
Sample B Male 53.7
Sample C Female 62.7
Sample D Female 64.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
72007750 Antisense, RP_051017_01_A11, Mouse strain C57BL/6J (56 days, male) 6.0
638699 Antisense, RP_040825_01_H08, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 2.2
72007750 Antisense, RP_051017_01_A11, Mouse strain C57BL/6J (56 days, male) 2.6
638699 Antisense, RP_040825_01_H08, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.