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PRXL2B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:27.5 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:120.2 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006403
Glial cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.3
1857 Female, age 85, left hemisphere 8.0
1781 Male, age 74, unknown 7.5
2290 Female, age 72, unknown 6.8
1854 Male, age 80, left hemisphere 6.5
2846 Female, age 79, unknown 5.9
2481 Female, age 94, left hemisphere 5.5
2289 Male, age 61, right hemisphere 5.2
2288 Male, age 75, left hemisphere 4.9
Claustrum
nTPM: 7.8
2645 Female, age 72, unknown 9.6
2284 Female, age 91, both hemispheres 9.0
2491 Male, age 75, both hemispheres 9.0
2568 Male, age 61, both hemispheres 8.7
2198 Male, age 80, both hemispheres 8.3
1956 Male, age 74, unknown 6.7
2392 Female, age 94, both hemispheres 6.7
2292 Female, age 85, both hemispheres 6.6
2196 Female, age 79, unknown 5.5
Globus pallidus, externus
nTPM: 5.1
2646 Male, age 61, right hemisphere 6.3
2772 Female, age 79, unknown 6.1
2395 Male, age 75, both hemispheres 4.6
2567 Female, age 72, unknown 4.4
1996 Male, age 80, right hemisphere 4.1
Globus pallidus, internus
nTPM: 4.2
2483 Female, age 94, right hemisphere 6.0
1818 Male, age 74, unknown 4.7
2287 Male, age 75, right hemisphere 4.6
2037 Male, age 80, right hemisphere 4.4
2566 Female, age 72, unknown 3.7
2778 Female, age 91, both hemispheres 3.5
2111 Female, age 85, right hemisphere 2.6
Nucleus accumbens
nTPM: 7.1
1856 Female, age 91, right hemisphere 10.1
1783 Male, age 74, unknown 8.3
1806 Female, age 85, left hemisphere 7.9
2824 Male, age 61, right hemisphere 7.8
2698 Female, age 72, unknown 6.3
2732 Male, age 80, right hemisphere 6.1
2286 Male, age 75, left hemisphere 5.3
2391 Female, age 94, left hemisphere 5.2
Nucleus basalis of Meynert
nTPM: 5.9
2569 Male, age 61, both hemispheres 7.3
2393 Male, age 80, right hemisphere 6.1
2484 Female, age 94, left hemisphere 5.2
2821 Male, age 75, both hemispheres 5.1
Nucleus of the diagonal band
nTPM: 12.0
1812 Female, age 91, both hemispheres 13.5
2775 Male, age 80, right hemisphere 12.7
2029 Male, age 61, right hemisphere 12.1
2195 Female, age 85, both hemispheres 11.1
1979 Male, age 74, unknown 10.5
Olfactory tubercle
nTPM: 11.8
2487 Female, age 94, left hemisphere 13.7
1846 Male, age 80, right hemisphere 11.8
1998 Female, age 91, both hemispheres 11.4
2856 Male, age 75, right hemisphere 10.3
Putamen
nTPM: 6.2
1838 Male, age 80, right hemisphere 7.9
1937 Female, age 91, right hemisphere 7.3
2647 Male, age 75, left hemisphere 7.0
2482 Female, age 94, left hemisphere 5.7
1829 Male, age 74, unknown 5.3
2466 Female, age 79, unknown 5.2
2489 Female, age 72, unknown 5.0
Septal nuclei
nTPM: 10.7
1960 Male, age 74, unknown 13.1
2031 Female, age 72, unknown 11.9
2009 Female, age 91, both hemispheres 11.1
2629 Female, age 94, right hemisphere 10.3
2059 Female, age 85, both hemispheres 10.0
2394 Male, age 61, left hemisphere 10.0
2199 Male, age 80, right hemisphere 8.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 50.5
Min nTPM: 4.5
Std nTPM: 5.9
Median nTPM: 20.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 50.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 33.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 33.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 32.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 31.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 31.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 31.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 30.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 30.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 30.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 50.1
Min nTPM: 9.3
Std nTPM: 7.8
Median nTPM: 28.0
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 50.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 47.1
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 46.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 45.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 44.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 43.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 42.5
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 41.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 41.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 40.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 40.2
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Brain - Putamen (basal ganglia)
Average nTPM: 19.6
Samples: 205

Max nTPM: 36.7
Min nTPM: 6.1
Std nTPM: 6.1
Median nTPM: 19.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 36.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 34.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 34.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 33.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 33.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 33.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 33.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 31.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 31.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 30.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 29.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.9
FF:10164-103B2 76 years, female 16.9
Globus pallidus
Scaled Tags Per Million: 2.5
FF:10161-103A8 76 years, female 4.3
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 13.1
FF:10037-101F1 23-56 years, mixed 13.1
Putamen
Scaled Tags Per Million: 13.2
FF:10176-103C5 60 years, female 13.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Caudate
nTPM: 36.9
Samples: 4

Max nTPM: 43.1
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 43.1
Sample C Male 42.4
Sample D Male 32.6
Putamen
nTPM: 42.4
Samples: 4

Max nTPM: 57.7
Min nTPM: 33.0
Sample A Female 36.0
Sample B Female 33.0
Sample C Male 57.7
Sample D Male 42.9
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 67.1
Min nTPM: 37.4
Sample A Female 37.4
Sample B Female 40.4
Sample C Male 67.1
Sample D Male 43.5
Ventral pallidum
nTPM: 41.7
Samples: 4

Max nTPM: 66.3
Min nTPM: 29.2
Sample A Female 29.2
Sample B Female 41.5
Sample C Male 66.3
Sample D Male 29.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 120.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.8
Samples: 4

Max nTPM: 130.0
Min nTPM: 93.5
Sample A Male 103.9
Sample B Male 130.0
Sample C Female 93.5
Sample D Female 111.7
Septum
nTPM: 120.3
Samples: 4

Max nTPM: 140.5
Min nTPM: 101.5
Sample A Male 110.2
Sample B Male 140.5
Sample C Female 128.8
Sample D Female 101.5
Ventral forebrain
nTPM: 114.9
Samples: 4

Max nTPM: 139.6
Min nTPM: 94.2
Sample A Male 116.2
Sample B Male 109.5
Sample C Female 139.6
Sample D Female 94.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
75692770 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 0.9
74047901 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 1.4
75692770 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 1.4
74047901 Antisense, RP_051214_02_B11, Mouse strain C57BL/6J (56 days, male) 0.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.