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BABAM2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:27.4 nTPM
HPA:27.4 nTPM
GTEx:24.0 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:37.7 nTPM
Mouse:48.8 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017926Antibody HPA048867
Glial cells Not detectedLow
Neuronal cells MediumLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Hippocampus
nTPM: 21.7
1855 Male, age 76, left hemisphere 24.6
1911 Female, age 85, right hemisphere 22.3
2621 Female, age 67, right hemisphere 22.3
1898 Male, age 80, left hemisphere 21.8
2529 Female, age 94, left hemisphere 19.7
2148 Female, age 91, left hemisphere 19.5
Dentate gyrus
nTPM: 22.4
2010 Male, age 76, both hemispheres 24.7
1927 Female, age 91, both hemispheres 23.8
2246 Female, age 85, both hemispheres 22.9
2531 Female, age 67, both hemispheres 22.9
2528 Male, age 74, both hemispheres 20.8
2530 Female, age 94, left hemisphere 19.5
Entorhinal gyrus
nTPM: 21.2
1787 Male, age 76, left hemisphere 23.5
1938 Female, age 85, left hemisphere 23.1
2686 Male, age 75, right hemisphere 22.9
2764 Male, age 80, right hemisphere 22.6
2613 Female, age 94, left hemisphere 19.0
2117 Female, age 91, right hemisphere 16.1
Hippocampus, CA1
nTPM: 24.4
2045 Male, age 76, both hemispheres 28.8
2749 Male, age 80, left hemisphere 28.3
1873 Female, age 85, both hemispheres 24.2
2527 Male, age 74, both hemispheres 20.5
2082 Female, age 91, right hemisphere 20.2
Hippocampus, CA2
nTPM: 22.0
1892 Male, age 76, both hemispheres 30.0
2249 Male, age 74, both hemispheres 21.1
1963 Male, age 80, left hemisphere 20.7
1940 Female, age 85, left hemisphere 20.6
2437 Female, age 94, left hemisphere 20.4
2113 Female, age 91, right hemisphere 19.5
Hippocampus, CA3
nTPM: 24.1
1867 Male, age 76, both hemispheres 28.7
2137 Male, age 80, left hemisphere 27.4
2620 Female, age 94, left hemisphere 24.5
2436 Male, age 74, both hemispheres 21.9
2861 Female, age 67, both hemispheres 21.2
1891 Female, age 85, both hemispheres 20.8
Parahippocampal cortex
nTPM: 23.2
2018 Male, age 76, both hemispheres 26.4
1850 Male, age 80, both hemispheres 25.8
2693 Female, age 94, both hemispheres 24.7
1933 Female, age 85, both hemispheres 24.3
2532 Female, age 72, left hemisphere 23.7
2245 Female, age 91, both hemispheres 23.3
2622 Female, age 67, right hemisphere 22.6
2250 Female, age 67, right hemisphere 22.0
1990 Female, age 91, right hemisphere 20.4
2692 Male, age 74, both hemispheres 19.2
Perirhinal gyrus
nTPM: 27.4
2848 Male, age 76, right hemisphere 28.5
1841 Female, age 85, right hemisphere 28.4
1794 Male, age 80, right hemisphere 27.7
1847 Female, age 91, left hemisphere 27.6
2521 Female, age 94, right hemisphere 24.5
Subiculum
nTPM: 21.9
2042 Male, age 76, both hemispheres 25.0
2438 Female, age 94, left hemisphere 22.5
1977 Female, age 85, both hemispheres 21.9
1901 Male, age 80, both hemispheres 21.4
2729 Female, age 91, right hemisphere 20.5
2619 Male, age 74, both hemispheres 19.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.0
Samples: 197

Max nTPM: 42.2
Min nTPM: 11.5
Std nTPM: 6.9
Median nTPM: 24.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 40.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 40.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 39.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 38.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 37.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 37.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 36.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 36.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 35.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 35.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.2
FF:10169-103B7 60 years, female 80.5
FF:10153-102I9 76 years, female 39.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 37.7
Samples: 4

Max nTPM: 47.0
Min nTPM: 29.3
Sample A Female 47.0
Sample B Female 41.5
Sample C Male 32.8
Sample D Male 29.3
Entorhinal cortex
nTPM: 29.2
Samples: 4

Max nTPM: 34.6
Min nTPM: 24.3
Sample A Female 34.6
Sample B Female 29.2
Sample C Male 28.5
Sample D Male 24.3
Subiculum
nTPM: 31.5
Samples: 4

Max nTPM: 34.8
Min nTPM: 27.4
Sample A Female 34.8
Sample B Female 32.0
Sample C Male 31.7
Sample D Male 27.4
Ventral hippocampus
nTPM: 37.5
Samples: 4

Max nTPM: 44.0
Min nTPM: 29.8
Sample A Female 36.1
Sample B Female 29.8
Sample C Male 44.0
Sample D Male 39.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.4
Samples: 4

Max nTPM: 48.7
Min nTPM: 41.7
Sample A Male 47.5
Sample B Male 43.7
Sample C Female 41.7
Sample D Female 48.7
Hippocampal formation
nTPM: 48.9
Samples: 4

Max nTPM: 51.9
Min nTPM: 43.6
Sample A Male 51.9
Sample B Male 50.7
Sample C Female 49.2
Sample D Female 43.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
73818810 Antisense, RP_050926_01_E01, Mouse strain C57BL/6J (56 days, male) 2.4
74359670 Antisense, RP_060207_01_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.