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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:8.5 nTPM
FANTOM5:77.9 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:57.2 nTPM
Allen mouse:10.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031342
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Hippocampus
nTPM: 19.8
1855 Male, age 76, left hemisphere 35.7
2148 Female, age 91, left hemisphere 34.2
1898 Male, age 80, left hemisphere 32.3
2621 Female, age 67, right hemisphere 16.4
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 22.8
1927 Female, age 91, both hemispheres 47.1
2010 Male, age 76, both hemispheres 28.3
2531 Female, age 67, both hemispheres 21.9
2528 Male, age 74, both hemispheres 15.2
2530 Female, age 94, left hemisphere 12.8
2246 Female, age 85, both hemispheres 11.6
Entorhinal gyrus
nTPM: 14.9
1938 Female, age 85, left hemisphere 28.2
2613 Female, age 94, left hemisphere 25.9
2764 Male, age 80, right hemisphere 25.1
1787 Male, age 76, left hemisphere 7.7
2686 Male, age 75, right hemisphere 2.4
2117 Female, age 91, right hemisphere 0.2
Hippocampus, CA1
nTPM: 23.4
2749 Male, age 80, left hemisphere 43.8
1873 Female, age 85, both hemispheres 36.0
2045 Male, age 76, both hemispheres 34.4
2527 Male, age 74, both hemispheres 2.9
2082 Female, age 91, right hemisphere 0.0
Hippocampus, CA2
nTPM: 13.6
1963 Male, age 80, left hemisphere 45.9
1892 Male, age 76, both hemispheres 30.2
1940 Female, age 85, left hemisphere 5.9
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 19.3
2620 Female, age 94, left hemisphere 61.9
2861 Female, age 67, both hemispheres 19.9
2137 Male, age 80, left hemisphere 19.0
1867 Male, age 76, both hemispheres 9.3
1891 Female, age 85, both hemispheres 5.7
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 8.3
1850 Male, age 80, both hemispheres 33.5
1990 Female, age 91, right hemisphere 18.2
1933 Female, age 85, both hemispheres 10.4
2532 Female, age 72, left hemisphere 6.7
2693 Female, age 94, both hemispheres 6.0
2622 Female, age 67, right hemisphere 3.3
2245 Female, age 91, both hemispheres 2.9
2692 Male, age 74, both hemispheres 2.4
2018 Male, age 76, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
Perirhinal gyrus
nTPM: 15.9
1847 Female, age 91, left hemisphere 37.5
1794 Male, age 80, right hemisphere 18.2
2848 Male, age 76, right hemisphere 15.1
1841 Female, age 85, right hemisphere 8.8
2521 Female, age 94, right hemisphere 0.0
Subiculum
nTPM: 2.8
2729 Female, age 91, right hemisphere 7.9
1977 Female, age 85, both hemispheres 7.0
1901 Male, age 80, both hemispheres 2.2
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.5
Samples: 197

Max nTPM: 49.3
Min nTPM: 0.2
Std nTPM: 8.6
Median nTPM: 5.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 49.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 40.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 39.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 39.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 33.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 32.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 31.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 31.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 30.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 26.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 25.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.9
FF:10169-103B7 60 years, female 120.3
FF:10153-102I9 76 years, female 35.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 44.9
Min nTPM: 24.5
Sample A Female 44.9
Sample B Female 41.9
Sample C Male 24.5
Sample D Male 26.4
Entorhinal cortex
nTPM: 16.2
Samples: 4

Max nTPM: 18.6
Min nTPM: 14.0
Sample A Female 15.4
Sample B Female 14.0
Sample C Male 18.6
Sample D Male 16.9
Subiculum
nTPM: 19.7
Samples: 4

Max nTPM: 30.1
Min nTPM: 14.3
Sample A Female 30.1
Sample B Female 18.4
Sample C Male 15.9
Sample D Male 14.3
Ventral hippocampus
nTPM: 28.1
Samples: 4

Max nTPM: 38.6
Min nTPM: 13.6
Sample A Female 35.1
Sample B Female 13.6
Sample C Male 24.9
Sample D Male 38.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 35.1
Sample A Male 35.6
Sample B Male 35.1
Sample C Female 38.5
Sample D Female 39.9
Hippocampal formation
nTPM: 57.2
Samples: 4

Max nTPM: 76.4
Min nTPM: 39.7
Sample A Male 39.7
Sample B Male 65.2
Sample C Female 76.4
Sample D Female 47.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.5
74003395 Antisense, RP_060119_02_B03, Mouse strain C57BL/6J (56 days, male) 11.5
74003410 Antisense, RP_050915_04_C01, Mouse strain C57BL/6J (56 days, male) 9.4
73636091 Antisense, RP_050915_04_C01, Mouse strain C57BL/6J (56 days, male) 8.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.