ABOUTMENU
HELP
NEWS
SLC5A11
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.2 nTPM
HPA:24.2 nTPM
GTEx:12.7 nTPM
FANTOM5:81.8 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:1.4 nTPM
Allen mouse:0.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA035331
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.2
2288 Male, age 75, left hemisphere 7.5
2846 Female, age 79, unknown 7.4
1781 Male, age 74, unknown 7.3
2481 Female, age 94, left hemisphere 6.1
1854 Male, age 80, left hemisphere 5.7
2289 Male, age 61, right hemisphere 5.5
2290 Female, age 72, unknown 5.3
1857 Female, age 85, left hemisphere 4.7
Claustrum
nTPM: 11.3
2292 Female, age 85, both hemispheres 15.9
1956 Male, age 74, unknown 13.5
2392 Female, age 94, both hemispheres 11.2
2196 Female, age 79, unknown 10.9
2491 Male, age 75, both hemispheres 10.5
2198 Male, age 80, both hemispheres 10.2
2645 Female, age 72, unknown 10.1
2284 Female, age 91, both hemispheres 9.9
2568 Male, age 61, both hemispheres 9.6
Globus pallidus, externus
nTPM: 22.0
2567 Female, age 72, unknown 25.8
1996 Male, age 80, right hemisphere 25.1
2646 Male, age 61, right hemisphere 21.2
2395 Male, age 75, both hemispheres 19.4
2772 Female, age 79, unknown 18.6
Globus pallidus, internus
nTPM: 24.2
2111 Female, age 85, right hemisphere 35.9
2778 Female, age 91, both hemispheres 31.5
2287 Male, age 75, right hemisphere 26.8
2566 Female, age 72, unknown 25.1
2037 Male, age 80, right hemisphere 22.1
1818 Male, age 74, unknown 18.0
2483 Female, age 94, right hemisphere 10.1
Nucleus accumbens
nTPM: 9.0
2391 Female, age 94, left hemisphere 16.3
2732 Male, age 80, right hemisphere 12.6
2698 Female, age 72, unknown 10.5
1806 Female, age 85, left hemisphere 7.7
2286 Male, age 75, left hemisphere 6.9
1783 Male, age 74, unknown 6.8
2824 Male, age 61, right hemisphere 6.8
1856 Female, age 91, right hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 10.0
2569 Male, age 61, both hemispheres 14.8
2821 Male, age 75, both hemispheres 10.0
2393 Male, age 80, right hemisphere 7.8
2484 Female, age 94, left hemisphere 7.4
Nucleus of the diagonal band
nTPM: 5.8
1812 Female, age 91, both hemispheres 8.9
2029 Male, age 61, right hemisphere 6.0
1979 Male, age 74, unknown 5.3
2195 Female, age 85, both hemispheres 4.6
2775 Male, age 80, right hemisphere 4.4
Olfactory tubercle
nTPM: 5.3
2487 Female, age 94, left hemisphere 5.8
1998 Female, age 91, both hemispheres 5.4
2856 Male, age 75, right hemisphere 5.1
1846 Male, age 80, right hemisphere 4.8
Putamen
nTPM: 8.8
2489 Female, age 72, unknown 11.4
1829 Male, age 74, unknown 10.2
2647 Male, age 75, left hemisphere 10.1
1937 Female, age 91, right hemisphere 9.2
2466 Female, age 79, unknown 8.7
2482 Female, age 94, left hemisphere 7.1
1838 Male, age 80, right hemisphere 4.7
Septal nuclei
nTPM: 6.4
2394 Male, age 61, left hemisphere 10.1
2199 Male, age 80, right hemisphere 6.5
2629 Female, age 94, right hemisphere 6.5
2059 Female, age 85, both hemispheres 6.2
2009 Female, age 91, both hemispheres 5.7
2031 Female, age 72, unknown 5.2
1960 Male, age 74, unknown 4.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.5
Samples: 246

Max nTPM: 83.0
Min nTPM: 0.1
Std nTPM: 8.3
Median nTPM: 3.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 83.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 52.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 43.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 40.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 39.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 30.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 27.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 24.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 18.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 16.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 16.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.4
Samples: 246

Max nTPM: 50.7
Min nTPM: 0.0
Std nTPM: 7.6
Median nTPM: 1.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 50.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 46.3
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 37.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 36.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 36.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 32.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 30.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 29.8
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 29.1
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 27.0
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 20.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.7
Samples: 205

Max nTPM: 132.9
Min nTPM: 0.2
Std nTPM: 13.1
Median nTPM: 9.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 132.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 56.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 47.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 46.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 44.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 41.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 40.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 39.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 39.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 33.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 32.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.1
FF:10164-103B2 76 years, female 2.1
Globus pallidus
Scaled Tags Per Million: 81.8
FF:10161-103A8 76 years, female 87.9
FF:10175-103C4 60 years, female 75.7
Nucleus accumbens
Scaled Tags Per Million: 18.2
FF:10037-101F1 23-56 years, mixed 18.2
Putamen
Scaled Tags Per Million: 6.1
FF:10176-103C5 60 years, female 6.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.2
Sample A Female 2.3
Sample B Female 2.2
Sample C Male 2.6
Sample D Male 2.2
Putamen
nTPM: 5.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 2.7
Sample A Female 8.4
Sample B Female 2.7
Sample C Male 4.6
Sample D Male 6.3
Septum
nTPM: 3.3
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 2.4
Sample C Male 4.1
Sample D Male 4.4
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 10.2
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 3.6
Sample C Male 10.2
Sample D Male 5.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.8
Sample A Male 1.6
Sample B Male 0.8
Sample C Female 1.1
Sample D Female 1.2
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.0
Sample A Male 2.0
Sample B Male 1.4
Sample C Female 1.0
Sample D Female 1.4
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.3
Sample A Male 0.8
Sample B Male 1.8
Sample C Female 1.0
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68666613 Antisense, RP_050126_02_F02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.4
68666613 Antisense, RP_050126_02_F02, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.