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SLC5A11
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA:21.5 nTPM
GTEx:59.3 nTPM
FANTOM5:181.2 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:2.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2411 Female, age 72, unknown 20.4
1870 Female, age 42, unknown 19.9
1830 Male, age 51, unknown 18.3
2019 Male, age 18, unknown 18.1
1833 Male, age 53, unknown 17.2
2828 Female, age 72, unknown 15.2
2219 Male, age 76, both hemispheres 12.4
2666 Male, age 74, left hemisphere 12.1
2586 Male, age 75, left hemisphere 11.5
1827 Male, age 72, unknown 10.8
Dorsal raphe nucleus
nTPM: 12.2
2750 Male, age 76, both hemispheres 23.8
1828 Male, age 53, unknown 11.5
2016 Female, age 72, unknown 10.9
2047 Male, age 72, unknown 7.7
2298 Female, age 72, unknown 7.0
Inferior colliculus
nTPM: 10.7
1890 Male, age 53, unknown 13.0
1848 Female, age 42, unknown 11.1
2097 Female, age 72, unknown 9.3
2849 Male, age 72, unknown 9.3
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Pedunculopontine tegmental nucleus
nTPM: 14.6
2334 Male, age 80, both hemispheres 17.9
1921 Female, age 85, both hemispheres 13.2
2338 Male, age 61, both hemispheres 12.8
Periaquaductal grey, anterior
nTPM: 9.5
2502 Female, age 75, unknown 10.3
1947 Male, age 18, unknown 10.1
1795 Male, age 51, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 8.0
2464 Female, age 72, unknown 11.4
1831 Male, age 72, unknown 9.9
1840 Male, age 53, unknown 5.4
2850 Male, age 76, both hemispheres 5.1
Periaquaductal grey, lateral
nTPM: 8.5
2053 Male, age 18, unknown 10.4
2272 Male, age 74, both hemispheres 9.8
2140 Male, age 76, both hemispheres 5.3
Pretectal area
nTPM: 10.0
1815 Male, age 53, unknown 12.5
2316 Male, age 76, right hemisphere 11.8
2407 Male, age 75, both hemispheres 11.2
2007 Male, age 72, unknown 11.1
2273 Male, age 74, both hemispheres 10.1
2667 Female, age 75, unknown 9.9
1817 Female, age 42, unknown 9.8
2825 Male, age 18, unknown 9.8
1944 Female, age 72, unknown 8.7
2224 Female, age 72, unknown 8.7
1816 Male, age 51, unknown 7.0
Red nucleus
nTPM: 21.5
2823 Male, age 76, right hemisphere 30.0
1865 Male, age 51, unknown 26.1
1904 Male, age 53, unknown 23.5
1821 Female, age 72, unknown 22.1
2769 Male, age 72, unknown 22.1
2227 Male, age 72, unknown 21.7
2503 Female, age 72, unknown 20.7
2588 Male, age 74, left hemisphere 20.1
2785 Male, age 18, unknown 19.1
1954 Female, age 42, unknown 18.6
2725 Female, age 75, unknown 17.7
2584 Male, age 75, left hemisphere 15.9
Substantia nigra
nTPM: 13.4
2583 Male, age 75, right hemisphere 18.0
2409 Female, age 72, unknown 17.3
1851 Male, age 51, unknown 16.0
2590 Female, age 75, unknown 15.5
1889 Female, age 72, unknown 12.6
2699 Male, age 18, unknown 12.5
1941 Male, age 53, unknown 11.7
2241 Male, age 72, unknown 11.5
1916 Female, age 42, unknown 10.2
2665 Male, age 74, both hemispheres 8.3
Superior colliculus
nTPM: 12.4
1913 Female, age 42, unknown 20.7
1995 Male, age 72, unknown 17.1
2587 Male, age 74, left hemisphere 14.9
1839 Male, age 51, unknown 12.8
1895 Male, age 76, right hemisphere 12.3
1796 Male, age 53, unknown 10.5
2668 Female, age 75, unknown 10.3
2087 Female, age 72, unknown 9.5
2664 Male, age 75, both hemispheres 7.9
2261 Male, age 18, unknown 7.7
Ventral tegmental area
nTPM: 14.5
2223 Female, age 72, unknown 19.2
2410 Female, age 72, unknown 18.1
1942 Male, age 51, unknown 13.2
2218 Male, age 76, both hemispheres 13.1
2021 Male, age 53, unknown 12.2
1915 Female, age 42, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.3
Samples: 139

Max nTPM: 345.3
Min nTPM: 5.2
Std nTPM: 49.9
Median nTPM: 46.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 345.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 323.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 266.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 165.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 160.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 150.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 141.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 136.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 119.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 118.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 117.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.2
FF:10158-103A5 76 years, female 181.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 44.2
Min nTPM: 5.8
Sample A Female 44.2
Sample B Female 8.5
Sample C Male 9.3
Sample D Male 5.8
Periaqueductal gray
nTPM: 6.3
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.4
Sample B Female 7.0
Sample C Male 5.4
Sample D Male 6.6
Substantia nigra
nTPM: 12.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 5.7
Sample A Female 10.3
Sample B Female 5.7
Sample C Male 10.5
Sample D Male 21.4
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 5.5
Sample A Female 10.5
Sample B Female 5.5
Sample C Male 15.5
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.0
Sample A Male 2.5
Sample B Male 2.2
Sample C Female 2.0
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68666613 Antisense, RP_050126_02_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.