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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:10.6 nTPM
FANTOM5:38.8 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:26.7 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.9
2846 Female, age 79, unknown 13.8
1854 Male, age 80, left hemisphere 13.4
2289 Male, age 61, right hemisphere 12.8
1857 Female, age 85, left hemisphere 12.6
2290 Female, age 72, unknown 12.5
1781 Male, age 74, unknown 12.1
2288 Male, age 75, left hemisphere 10.1
2481 Female, age 94, left hemisphere 8.3
Claustrum
nTPM: 11.0
2292 Female, age 85, both hemispheres 13.3
2645 Female, age 72, unknown 13.0
2284 Female, age 91, both hemispheres 12.3
2392 Female, age 94, both hemispheres 12.0
2196 Female, age 79, unknown 10.8
2568 Male, age 61, both hemispheres 10.3
1956 Male, age 74, unknown 10.1
2198 Male, age 80, both hemispheres 8.9
2491 Male, age 75, both hemispheres 8.6
Globus pallidus, externus
nTPM: 12.7
2395 Male, age 75, both hemispheres 13.8
2567 Female, age 72, unknown 13.2
2646 Male, age 61, right hemisphere 12.4
2772 Female, age 79, unknown 12.3
1996 Male, age 80, right hemisphere 11.9
Globus pallidus, internus
nTPM: 13.2
2566 Female, age 72, unknown 14.7
2778 Female, age 91, both hemispheres 13.4
2111 Female, age 85, right hemisphere 13.3
1818 Male, age 74, unknown 13.2
2037 Male, age 80, right hemisphere 13.2
2483 Female, age 94, right hemisphere 12.5
2287 Male, age 75, right hemisphere 12.3
Nucleus accumbens
nTPM: 11.3
1856 Female, age 91, right hemisphere 13.4
2698 Female, age 72, unknown 12.5
1783 Male, age 74, unknown 12.0
1806 Female, age 85, left hemisphere 11.1
2732 Male, age 80, right hemisphere 11.0
2391 Female, age 94, left hemisphere 10.8
2824 Male, age 61, right hemisphere 10.2
2286 Male, age 75, left hemisphere 9.3
Nucleus basalis of Meynert
nTPM: 13.6
2484 Female, age 94, left hemisphere 15.4
2393 Male, age 80, right hemisphere 13.4
2569 Male, age 61, both hemispheres 13.3
2821 Male, age 75, both hemispheres 12.3
Nucleus of the diagonal band
nTPM: 9.2
1979 Male, age 74, unknown 9.8
2195 Female, age 85, both hemispheres 9.8
2775 Male, age 80, right hemisphere 9.3
2029 Male, age 61, right hemisphere 8.9
1812 Female, age 91, both hemispheres 8.2
Olfactory tubercle
nTPM: 9.8
2856 Male, age 75, right hemisphere 10.1
1846 Male, age 80, right hemisphere 9.9
1998 Female, age 91, both hemispheres 9.8
2487 Female, age 94, left hemisphere 9.3
Putamen
nTPM: 12.6
2489 Female, age 72, unknown 15.1
1838 Male, age 80, right hemisphere 13.4
1937 Female, age 91, right hemisphere 12.3
2482 Female, age 94, left hemisphere 12.3
1829 Male, age 74, unknown 11.9
2647 Male, age 75, left hemisphere 11.6
2466 Female, age 79, unknown 11.5
Septal nuclei
nTPM: 10.1
2394 Male, age 61, left hemisphere 13.3
2199 Male, age 80, right hemisphere 11.9
2059 Female, age 85, both hemispheres 10.7
2031 Female, age 72, unknown 9.6
2009 Female, age 91, both hemispheres 9.1
2629 Female, age 94, right hemisphere 8.5
1960 Male, age 74, unknown 7.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.0
Samples: 246

Max nTPM: 19.2
Min nTPM: 5.6
Std nTPM: 2.8
Median nTPM: 9.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 19.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 18.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 17.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 17.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 17.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 17.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 16.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 16.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 16.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 16.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 20.5
Min nTPM: 3.5
Std nTPM: 2.5
Median nTPM: 8.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 20.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 19.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 18.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 17.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 16.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 16.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 16.3
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 16.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 15.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 15.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 15.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.6
Samples: 205

Max nTPM: 26.2
Min nTPM: 5.9
Std nTPM: 3.0
Median nTPM: 10.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 26.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 21.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 19.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 19.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 19.4
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 19.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 18.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 16.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 16.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 16.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 16.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.0
FF:10164-103B2 76 years, female 35.0
Globus pallidus
Scaled Tags Per Million: 38.8
FF:10175-103C4 60 years, female 39.4
FF:10161-103A8 76 years, female 38.3
Nucleus accumbens
Scaled Tags Per Million: 23.6
FF:10037-101F1 23-56 years, mixed 23.6
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.0
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.4
Sample A Female 5.9
Sample B Female 5.7
Sample C Male 5.4
Sample D Male 7.1
Putamen
nTPM: 6.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.6
Sample A Female 8.2
Sample B Female 6.2
Sample C Male 5.6
Sample D Male 6.2
Septum
nTPM: 8.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.0
Sample A Female 8.8
Sample B Female 7.0
Sample C Male 9.0
Sample D Male 9.8
Ventral pallidum
nTPM: 6.6
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.9
Sample A Female 6.6
Sample B Female 6.0
Sample C Male 5.9
Sample D Male 7.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.6
Samples: 4

Max nTPM: 24.5
Min nTPM: 19.7
Sample A Male 24.3
Sample B Male 24.5
Sample C Female 19.7
Sample D Female 21.7
Septum
nTPM: 26.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 24.1
Sample A Male 25.3
Sample B Male 29.0
Sample C Female 28.2
Sample D Female 24.1
Ventral forebrain
nTPM: 24.0
Samples: 4

Max nTPM: 28.7
Min nTPM: 20.4
Sample A Male 22.5
Sample B Male 24.4
Sample C Female 28.7
Sample D Female 20.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
69169301 Antisense, RP_050321_03_C09, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
69169301 Antisense, RP_050321_03_C09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.