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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA:46.8 nTPM
GTEx:36.6 nTPM
FANTOM5:297.2 Scaled Tags Per Million
Pig:89.5 nTPM
Mouse:51.2 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2019 Male, age 18, unknown 50.1
2411 Female, age 72, unknown 47.1
1830 Male, age 51, unknown 46.8
1833 Male, age 53, unknown 46.6
1870 Female, age 42, unknown 45.9
2828 Female, age 72, unknown 45.3
1827 Male, age 72, unknown 44.3
2666 Male, age 74, left hemisphere 43.7
2586 Male, age 75, left hemisphere 40.4
2219 Male, age 76, both hemispheres 39.5
Dorsal raphe nucleus
nTPM: 43.9
2750 Male, age 76, both hemispheres 46.2
2016 Female, age 72, unknown 44.1
2047 Male, age 72, unknown 43.2
1828 Male, age 53, unknown 43.1
2298 Female, age 72, unknown 42.6
Inferior colliculus
nTPM: 44.4
2849 Male, age 72, unknown 44.9
1848 Female, age 42, unknown 44.4
2097 Female, age 72, unknown 44.3
1890 Male, age 53, unknown 43.8
Median raphe nucleus
nTPM: 44.7
2220 Male, age 76, midline 44.7
Pedunculopontine tegmental nucleus
nTPM: 43.1
2334 Male, age 80, both hemispheres 44.8
1921 Female, age 85, both hemispheres 43.2
2338 Male, age 61, both hemispheres 41.2
Periaquaductal grey, anterior
nTPM: 42.5
2502 Female, age 75, unknown 43.7
1947 Male, age 18, unknown 43.2
1795 Male, age 51, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 44.9
2850 Male, age 76, both hemispheres 49.1
1831 Male, age 72, unknown 43.7
2464 Female, age 72, unknown 43.7
1840 Male, age 53, unknown 43.0
Periaquaductal grey, lateral
nTPM: 45.0
2140 Male, age 76, both hemispheres 50.0
2053 Male, age 18, unknown 42.8
2272 Male, age 74, both hemispheres 42.2
Pretectal area
nTPM: 45.2
1817 Female, age 42, unknown 48.4
2316 Male, age 76, right hemisphere 46.9
1815 Male, age 53, unknown 46.7
2273 Male, age 74, both hemispheres 46.5
1944 Female, age 72, unknown 45.9
2667 Female, age 75, unknown 45.9
2007 Male, age 72, unknown 45.5
1816 Male, age 51, unknown 44.6
2825 Male, age 18, unknown 42.2
2407 Male, age 75, both hemispheres 42.1
2224 Female, age 72, unknown 42.0
Red nucleus
nTPM: 46.8
1904 Male, age 53, unknown 49.7
1954 Female, age 42, unknown 49.0
1821 Female, age 72, unknown 48.9
2785 Male, age 18, unknown 48.7
1865 Male, age 51, unknown 48.5
2503 Female, age 72, unknown 48.0
2227 Male, age 72, unknown 46.1
2823 Male, age 76, right hemisphere 45.8
2588 Male, age 74, left hemisphere 45.7
2769 Male, age 72, unknown 45.4
2725 Female, age 75, unknown 44.6
2584 Male, age 75, left hemisphere 41.7
Substantia nigra
nTPM: 44.3
2409 Female, age 72, unknown 47.7
2590 Female, age 75, unknown 46.9
1889 Female, age 72, unknown 45.0
2241 Male, age 72, unknown 44.4
1941 Male, age 53, unknown 44.3
2583 Male, age 75, right hemisphere 44.1
2665 Male, age 74, both hemispheres 43.4
1851 Male, age 51, unknown 43.0
2699 Male, age 18, unknown 42.9
1916 Female, age 42, unknown 41.4
Superior colliculus
nTPM: 44.6
1913 Female, age 42, unknown 49.7
1995 Male, age 72, unknown 47.9
1895 Male, age 76, right hemisphere 45.5
1839 Male, age 51, unknown 44.5
2587 Male, age 74, left hemisphere 44.0
1796 Male, age 53, unknown 43.9
2261 Male, age 18, unknown 43.7
2087 Female, age 72, unknown 43.3
2668 Female, age 75, unknown 42.3
2664 Male, age 75, both hemispheres 41.4
Ventral tegmental area
nTPM: 42.9
2410 Female, age 72, unknown 44.8
2218 Male, age 76, both hemispheres 43.9
2223 Female, age 72, unknown 43.3
1942 Male, age 51, unknown 43.2
1915 Female, age 42, unknown 41.4
2021 Male, age 53, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 55.3
Min nTPM: 20.8
Std nTPM: 6.1
Median nTPM: 37.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 55.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 52.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 49.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 48.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 48.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 47.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 47.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 46.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 46.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 297.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 297.2
FF:10158-103A5 76 years, female 297.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.5
Pig sample Sample description nTPM
Midbrain
nTPM: 89.5
Samples: 4

Max nTPM: 104.5
Min nTPM: 74.8
Sample A Female 104.5
Sample B Female 80.7
Sample C Male 97.9
Sample D Male 74.8
Periaqueductal gray
nTPM: 79.5
Samples: 3

Max nTPM: 82.2
Min nTPM: 75.6
Sample B Female 82.2
Sample C Male 80.7
Sample D Male 75.6
Substantia nigra
nTPM: 85.6
Samples: 4

Max nTPM: 88.4
Min nTPM: 82.9
Sample A Female 88.4
Sample B Female 83.8
Sample C Male 82.9
Sample D Male 87.3
Superior colliculi
nTPM: 86.1
Samples: 4

Max nTPM: 90.7
Min nTPM: 83.6
Sample A Female 85.2
Sample B Female 84.9
Sample C Male 90.7
Sample D Male 83.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 54.9
Min nTPM: 44.1
Sample A Male 44.1
Sample B Male 54.9
Sample C Female 54.2
Sample D Female 51.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
996 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 7.9
997 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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