ABOUTMENU
HELP
NEWS
NAE1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA:26.1 nTPM
GTEx:26.2 nTPM
FANTOM5:47.3 Scaled Tags Per Million
Mouse:52.1 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2411 Female, age 72, unknown 27.2
1830 Male, age 51, unknown 25.5
2019 Male, age 18, unknown 25.5
1833 Male, age 53, unknown 25.3
1870 Female, age 42, unknown 25.0
2219 Male, age 76, both hemispheres 25.0
1827 Male, age 72, unknown 23.7
2666 Male, age 74, left hemisphere 21.9
2828 Female, age 72, unknown 21.6
2586 Male, age 75, left hemisphere 20.8
Dorsal raphe nucleus
nTPM: 25.5
2298 Female, age 72, unknown 26.5
2750 Male, age 76, both hemispheres 26.2
2047 Male, age 72, unknown 25.7
1828 Male, age 53, unknown 25.0
2016 Female, age 72, unknown 24.4
Inferior colliculus
nTPM: 25.1
2097 Female, age 72, unknown 26.6
1848 Female, age 42, unknown 25.9
1890 Male, age 53, unknown 24.3
2849 Male, age 72, unknown 23.6
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Pedunculopontine tegmental nucleus
nTPM: 25.3
2334 Male, age 80, both hemispheres 26.5
1921 Female, age 85, both hemispheres 25.6
2338 Male, age 61, both hemispheres 23.9
Periaquaductal grey, anterior
nTPM: 24.3
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 24.7
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 25.8
2464 Female, age 72, unknown 25.2
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 23.5
Periaquaductal grey, lateral
nTPM: 24.7
2272 Male, age 74, both hemispheres 26.1
2053 Male, age 18, unknown 24.0
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 25.1
2273 Male, age 74, both hemispheres 27.5
2224 Female, age 72, unknown 26.4
2316 Male, age 76, right hemisphere 26.3
1816 Male, age 51, unknown 25.1
1817 Female, age 42, unknown 25.0
2667 Female, age 75, unknown 24.7
1944 Female, age 72, unknown 24.6
2407 Male, age 75, both hemispheres 24.6
2007 Male, age 72, unknown 24.5
1815 Male, age 53, unknown 24.1
2825 Male, age 18, unknown 23.6
Red nucleus
nTPM: 24.7
1821 Female, age 72, unknown 27.2
1954 Female, age 42, unknown 25.9
2503 Female, age 72, unknown 25.6
1904 Male, age 53, unknown 25.2
2769 Male, age 72, unknown 25.0
2823 Male, age 76, right hemisphere 25.0
2785 Male, age 18, unknown 24.6
1865 Male, age 51, unknown 24.5
2725 Female, age 75, unknown 24.2
2227 Male, age 72, unknown 24.1
2588 Male, age 74, left hemisphere 23.3
2584 Male, age 75, left hemisphere 21.3
Substantia nigra
nTPM: 24.8
2241 Male, age 72, unknown 28.5
1916 Female, age 42, unknown 25.4
1941 Male, age 53, unknown 25.1
2409 Female, age 72, unknown 25.0
2590 Female, age 75, unknown 25.0
1851 Male, age 51, unknown 24.8
1889 Female, age 72, unknown 24.7
2699 Male, age 18, unknown 24.2
2583 Male, age 75, right hemisphere 23.8
2665 Male, age 74, both hemispheres 21.7
Superior colliculus
nTPM: 24.2
2587 Male, age 74, left hemisphere 25.8
1895 Male, age 76, right hemisphere 25.3
2261 Male, age 18, unknown 25.0
1839 Male, age 51, unknown 24.4
2087 Female, age 72, unknown 24.3
2668 Female, age 75, unknown 24.0
1995 Male, age 72, unknown 23.9
1913 Female, age 42, unknown 23.8
1796 Male, age 53, unknown 23.5
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 25.5
2218 Male, age 76, both hemispheres 25.2
2223 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 24.8
2021 Male, age 53, unknown 24.5
1942 Male, age 51, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 68.6
Min nTPM: 16.7
Std nTPM: 5.5
Median nTPM: 25.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 38.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 35.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 33.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 33.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 33.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 33.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.3
FF:10158-103A5 76 years, female 47.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.1
Samples: 4

Max nTPM: 53.7
Min nTPM: 50.7
Sample A Male 52.5
Sample B Male 53.7
Sample C Female 51.3
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
76098392 Antisense, RP_060626_01_G05, Mouse strain C57BL/6J (56 days, male) 4.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.