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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA:27.8 nTPM
GTEx:44.4 nTPM
FANTOM5:50.8 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:41.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.1
1830 Male, age 51, unknown 28.6
1833 Male, age 53, unknown 27.9
2411 Female, age 72, unknown 27.6
2666 Male, age 74, left hemisphere 27.6
1870 Female, age 42, unknown 27.5
2586 Male, age 75, left hemisphere 27.3
1827 Male, age 72, unknown 27.2
2828 Female, age 72, unknown 26.3
2019 Male, age 18, unknown 26.2
2219 Male, age 76, both hemispheres 24.6
Dorsal raphe nucleus
nTPM: 26.9
2298 Female, age 72, unknown 28.0
2750 Male, age 76, both hemispheres 27.5
1828 Male, age 53, unknown 26.7
2016 Female, age 72, unknown 26.5
2047 Male, age 72, unknown 26.0
Inferior colliculus
nTPM: 25.5
2097 Female, age 72, unknown 27.5
1890 Male, age 53, unknown 25.4
2849 Male, age 72, unknown 25.3
1848 Female, age 42, unknown 23.7
Median raphe nucleus
nTPM: 26.6
2220 Male, age 76, midline 26.6
Pedunculopontine tegmental nucleus
nTPM: 25.7
1921 Female, age 85, both hemispheres 27.5
2338 Male, age 61, both hemispheres 25.2
2334 Male, age 80, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 27.4
1795 Male, age 51, unknown 26.2
2502 Female, age 75, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 23.8
2464 Female, age 72, unknown 24.5
2850 Male, age 76, both hemispheres 24.5
1831 Male, age 72, unknown 24.0
1840 Male, age 53, unknown 22.2
Periaquaductal grey, lateral
nTPM: 25.4
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 25.2
2272 Male, age 74, both hemispheres 25.2
Pretectal area
nTPM: 26.9
2667 Female, age 75, unknown 29.3
1817 Female, age 42, unknown 28.1
2007 Male, age 72, unknown 28.1
2407 Male, age 75, both hemispheres 27.7
2316 Male, age 76, right hemisphere 27.3
1815 Male, age 53, unknown 26.4
2224 Female, age 72, unknown 26.3
2825 Male, age 18, unknown 26.2
2273 Male, age 74, both hemispheres 25.9
1816 Male, age 51, unknown 25.5
1944 Female, age 72, unknown 25.3
Red nucleus
nTPM: 27.8
2227 Male, age 72, unknown 29.6
2769 Male, age 72, unknown 29.2
1865 Male, age 51, unknown 29.0
2588 Male, age 74, left hemisphere 28.9
2785 Male, age 18, unknown 28.9
1954 Female, age 42, unknown 27.9
2823 Male, age 76, right hemisphere 27.6
1904 Male, age 53, unknown 27.2
2584 Male, age 75, left hemisphere 27.2
1821 Female, age 72, unknown 26.7
2503 Female, age 72, unknown 26.1
2725 Female, age 75, unknown 25.2
Substantia nigra
nTPM: 26.7
2409 Female, age 72, unknown 30.8
2590 Female, age 75, unknown 28.4
2583 Male, age 75, right hemisphere 28.3
1941 Male, age 53, unknown 27.6
1851 Male, age 51, unknown 26.1
1916 Female, age 42, unknown 25.8
1889 Female, age 72, unknown 25.6
2665 Male, age 74, both hemispheres 25.1
2241 Male, age 72, unknown 25.0
2699 Male, age 18, unknown 24.3
Superior colliculus
nTPM: 27.2
2261 Male, age 18, unknown 29.3
1796 Male, age 53, unknown 28.7
2087 Female, age 72, unknown 28.7
2664 Male, age 75, both hemispheres 28.4
1913 Female, age 42, unknown 27.6
2668 Female, age 75, unknown 26.9
1839 Male, age 51, unknown 26.3
1995 Male, age 72, unknown 25.5
1895 Male, age 76, right hemisphere 25.4
2587 Male, age 74, left hemisphere 25.4
Ventral tegmental area
nTPM: 26.8
2223 Female, age 72, unknown 29.1
2218 Male, age 76, both hemispheres 27.2
1942 Male, age 51, unknown 26.9
1915 Female, age 42, unknown 26.8
2021 Male, age 53, unknown 26.6
2410 Female, age 72, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.4
Samples: 139

Max nTPM: 70.1
Min nTPM: 33.3
Std nTPM: 5.4
Median nTPM: 43.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 70.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 56.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 55.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 54.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 54.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.8
FF:10158-103A5 76 years, female 50.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 35.3
Min nTPM: 24.7
Sample A Female 35.3
Sample B Female 26.9
Sample C Male 26.9
Sample D Male 24.7
Periaqueductal gray
nTPM: 22.1
Samples: 3

Max nTPM: 24.2
Min nTPM: 20.3
Sample B Female 24.2
Sample C Male 21.9
Sample D Male 20.3
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.4
Sample A Female 28.4
Sample B Female 22.4
Sample C Male 24.1
Sample D Male 27.3
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 29.9
Min nTPM: 25.6
Sample A Female 29.9
Sample B Female 26.7
Sample C Male 25.6
Sample D Male 27.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 43.2
Min nTPM: 39.1
Sample A Male 41.8
Sample B Male 39.1
Sample C Female 40.5
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70598387 Antisense, RP_050412_01_F04, Mouse strain C57BL/6J (56 days, male) 1.6
74988722 Antisense, RP_060315_04_A12, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.