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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.5 nTPM
HPA:87.5 nTPM
GTEx:67.6 nTPM
FANTOM5:173.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.6
2586 Male, age 75, left hemisphere 124.4
2828 Female, age 72, unknown 83.1
1833 Male, age 53, unknown 81.6
1830 Male, age 51, unknown 81.5
2411 Female, age 72, unknown 78.5
2019 Male, age 18, unknown 78.1
1870 Female, age 42, unknown 78.0
2666 Male, age 74, left hemisphere 70.8
1827 Male, age 72, unknown 70.7
2219 Male, age 76, both hemispheres 59.0
Dorsal raphe nucleus
nTPM: 65.4
2750 Male, age 76, both hemispheres 82.0
2047 Male, age 72, unknown 64.8
1828 Male, age 53, unknown 63.7
2016 Female, age 72, unknown 63.2
2298 Female, age 72, unknown 53.0
Inferior colliculus
nTPM: 61.8
1848 Female, age 42, unknown 64.6
1890 Male, age 53, unknown 62.6
2849 Male, age 72, unknown 61.6
2097 Female, age 72, unknown 58.6
Median raphe nucleus
nTPM: 62.9
2220 Male, age 76, midline 62.9
Pedunculopontine tegmental nucleus
nTPM: 63.9
2334 Male, age 80, both hemispheres 68.6
1921 Female, age 85, both hemispheres 62.7
2338 Male, age 61, both hemispheres 60.3
Periaquaductal grey, anterior
nTPM: 69.3
2502 Female, age 75, unknown 75.7
1795 Male, age 51, unknown 69.0
1947 Male, age 18, unknown 63.2
Periaquaductal grey, dorsal
nTPM: 59.5
2464 Female, age 72, unknown 66.9
1831 Male, age 72, unknown 61.1
2850 Male, age 76, both hemispheres 58.7
1840 Male, age 53, unknown 51.1
Periaquaductal grey, lateral
nTPM: 65.6
2053 Male, age 18, unknown 69.1
2272 Male, age 74, both hemispheres 63.9
2140 Male, age 76, both hemispheres 63.8
Pretectal area
nTPM: 67.3
2316 Male, age 76, right hemisphere 80.3
2407 Male, age 75, both hemispheres 75.5
1815 Male, age 53, unknown 74.2
1817 Female, age 42, unknown 69.0
2007 Male, age 72, unknown 67.9
2825 Male, age 18, unknown 67.0
2667 Female, age 75, unknown 62.9
1944 Female, age 72, unknown 62.6
1816 Male, age 51, unknown 62.5
2224 Female, age 72, unknown 60.0
2273 Male, age 74, both hemispheres 58.2
Red nucleus
nTPM: 87.5
2823 Male, age 76, right hemisphere 96.4
1904 Male, age 53, unknown 94.7
2227 Male, age 72, unknown 91.7
2769 Male, age 72, unknown 91.1
2785 Male, age 18, unknown 88.9
2503 Female, age 72, unknown 88.6
1865 Male, age 51, unknown 88.2
2588 Male, age 74, left hemisphere 86.0
2725 Female, age 75, unknown 84.6
1954 Female, age 42, unknown 82.1
2584 Male, age 75, left hemisphere 81.6
1821 Female, age 72, unknown 76.5
Substantia nigra
nTPM: 62.8
2583 Male, age 75, right hemisphere 73.7
2590 Female, age 75, unknown 66.9
1851 Male, age 51, unknown 66.5
1889 Female, age 72, unknown 65.1
2699 Male, age 18, unknown 63.6
1941 Male, age 53, unknown 61.7
2409 Female, age 72, unknown 60.6
1916 Female, age 42, unknown 59.0
2665 Male, age 74, both hemispheres 57.3
2241 Male, age 72, unknown 53.6
Superior colliculus
nTPM: 74.0
1913 Female, age 42, unknown 89.4
1995 Male, age 72, unknown 84.3
2664 Male, age 75, both hemispheres 75.0
2261 Male, age 18, unknown 74.1
1796 Male, age 53, unknown 72.6
1895 Male, age 76, right hemisphere 72.3
1839 Male, age 51, unknown 71.4
2668 Female, age 75, unknown 68.6
2587 Male, age 74, left hemisphere 67.9
2087 Female, age 72, unknown 64.4
Ventral tegmental area
nTPM: 69.6
2223 Female, age 72, unknown 79.0
2410 Female, age 72, unknown 74.0
1942 Male, age 51, unknown 68.8
2021 Male, age 53, unknown 67.5
2218 Male, age 76, both hemispheres 67.3
1915 Female, age 42, unknown 61.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.6
Samples: 139

Max nTPM: 223.1
Min nTPM: 27.0
Std nTPM: 25.4
Median nTPM: 63.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 223.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 150.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 130.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 125.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 117.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 108.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 105.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 104.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 104.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 102.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 101.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.8
FF:10158-103A5 76 years, female 173.8

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