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CACFD1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA:6.2 nTPM
GTEx:10.8 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:31.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.1
2289 Male, age 61, right hemisphere 8.0
2288 Male, age 75, left hemisphere 5.2
2481 Female, age 94, left hemisphere 5.0
1781 Male, age 74, unknown 4.8
1854 Male, age 80, left hemisphere 4.6
1857 Female, age 85, left hemisphere 4.6
2290 Female, age 72, unknown 4.5
2846 Female, age 79, unknown 3.9
Claustrum
nTPM: 5.4
2645 Female, age 72, unknown 6.5
2392 Female, age 94, both hemispheres 5.9
2284 Female, age 91, both hemispheres 5.8
2198 Male, age 80, both hemispheres 5.4
2491 Male, age 75, both hemispheres 5.4
2568 Male, age 61, both hemispheres 5.2
2292 Female, age 85, both hemispheres 4.8
1956 Male, age 74, unknown 4.7
2196 Female, age 79, unknown 4.6
Globus pallidus, externus
nTPM: 6.2
2567 Female, age 72, unknown 8.6
2646 Male, age 61, right hemisphere 7.8
2772 Female, age 79, unknown 5.3
1996 Male, age 80, right hemisphere 4.7
2395 Male, age 75, both hemispheres 4.4
Globus pallidus, internus
nTPM: 6.2
2566 Female, age 72, unknown 6.9
1818 Male, age 74, unknown 6.8
2111 Female, age 85, right hemisphere 6.6
2483 Female, age 94, right hemisphere 6.3
2778 Female, age 91, both hemispheres 6.2
2037 Male, age 80, right hemisphere 5.8
2287 Male, age 75, right hemisphere 4.6
Nucleus accumbens
nTPM: 4.9
2391 Female, age 94, left hemisphere 6.1
2732 Male, age 80, right hemisphere 6.0
1806 Female, age 85, left hemisphere 5.2
1783 Male, age 74, unknown 5.1
2286 Male, age 75, left hemisphere 4.7
2824 Male, age 61, right hemisphere 4.5
2698 Female, age 72, unknown 4.1
1856 Female, age 91, right hemisphere 3.9
Nucleus basalis of Meynert
nTPM: 5.6
2569 Male, age 61, both hemispheres 7.8
2484 Female, age 94, left hemisphere 5.7
2393 Male, age 80, right hemisphere 4.7
2821 Male, age 75, both hemispheres 4.2
Nucleus of the diagonal band
nTPM: 4.5
2029 Male, age 61, right hemisphere 5.3
1979 Male, age 74, unknown 5.0
2195 Female, age 85, both hemispheres 4.2
2775 Male, age 80, right hemisphere 3.9
1812 Female, age 91, both hemispheres 3.8
Olfactory tubercle
nTPM: 4.4
1998 Female, age 91, both hemispheres 5.0
2487 Female, age 94, left hemisphere 4.8
2856 Male, age 75, right hemisphere 4.7
1846 Male, age 80, right hemisphere 3.3
Putamen
nTPM: 5.5
2647 Male, age 75, left hemisphere 7.1
1838 Male, age 80, right hemisphere 6.3
1829 Male, age 74, unknown 5.5
2466 Female, age 79, unknown 5.3
2489 Female, age 72, unknown 4.9
1937 Female, age 91, right hemisphere 4.6
2482 Female, age 94, left hemisphere 4.6
Septal nuclei
nTPM: 5.3
2059 Female, age 85, both hemispheres 8.5
2394 Male, age 61, left hemisphere 5.3
2629 Female, age 94, right hemisphere 5.3
2199 Male, age 80, right hemisphere 5.2
1960 Male, age 74, unknown 4.8
2009 Female, age 91, both hemispheres 4.1
2031 Female, age 72, unknown 3.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 30.6
Min nTPM: 2.7
Std nTPM: 3.4
Median nTPM: 9.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 30.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 22.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 20.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 20.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 18.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 17.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 17.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 17.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 16.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 16.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 35.1
Min nTPM: 3.4
Std nTPM: 3.9
Median nTPM: 9.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 35.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 28.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 22.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 22.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 21.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 21.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 19.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 18.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 18.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 18.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 18.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.8
Samples: 205

Max nTPM: 22.4
Min nTPM: 4.1
Std nTPM: 3.3
Median nTPM: 10.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 22.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 19.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 19.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 19.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 19.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 18.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 18.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 17.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 17.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 17.1
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 17.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.3
FF:10164-103B2 76 years, female 11.3
Globus pallidus
Scaled Tags Per Million: 12.9
FF:10175-103C4 60 years, female 13.4
FF:10161-103A8 76 years, female 12.4
Nucleus accumbens
Scaled Tags Per Million: 9.6
FF:10037-101F1 23-56 years, mixed 9.6
Putamen
Scaled Tags Per Million: 8.6
FF:10176-103C5 60 years, female 8.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Caudate
nTPM: 7.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.8
Sample A Female 7.2
Sample B Female 7.5
Sample C Male 6.8
Sample D Male 7.7
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.1
Sample A Female 8.8
Sample B Female 7.2
Sample C Male 5.1
Sample D Male 7.3
Septum
nTPM: 7.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 7.2
Sample C Male 6.9
Sample D Male 7.7
Ventral pallidum
nTPM: 8.1
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.4
Sample C Male 8.8
Sample D Male 8.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.0
Samples: 4

Max nTPM: 31.8
Min nTPM: 27.1
Sample A Male 27.2
Sample B Male 27.1
Sample C Female 31.8
Sample D Female 30.0
Septum
nTPM: 31.9
Samples: 4

Max nTPM: 33.6
Min nTPM: 29.7
Sample A Male 32.2
Sample B Male 33.6
Sample C Female 29.7
Sample D Female 32.0
Ventral forebrain
nTPM: 30.1
Samples: 4

Max nTPM: 32.4
Min nTPM: 28.6
Sample A Male 29.5
Sample B Male 28.6
Sample C Female 29.7
Sample D Female 32.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74431804 Antisense, RP_060207_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74431804 Antisense, RP_060207_02_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.