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SHKBP1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:16.4 nTPM
FANTOM5:15.7 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:2.7 nTPM
Allen mouse:2.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041887
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.2
1855 Male, age 76, left hemisphere 15.3
2529 Female, age 94, left hemisphere 15.2
1911 Female, age 85, right hemisphere 14.1
1898 Male, age 80, left hemisphere 13.9
2621 Female, age 67, right hemisphere 13.7
2148 Female, age 91, left hemisphere 12.6
Dentate gyrus
nTPM: 13.0
2530 Female, age 94, left hemisphere 15.0
2010 Male, age 76, both hemispheres 14.4
2246 Female, age 85, both hemispheres 13.0
2531 Female, age 67, both hemispheres 12.3
2528 Male, age 74, both hemispheres 12.1
1927 Female, age 91, both hemispheres 11.3
Entorhinal gyrus
nTPM: 13.4
2117 Female, age 91, right hemisphere 15.6
2764 Male, age 80, right hemisphere 13.8
1787 Male, age 76, left hemisphere 13.4
2613 Female, age 94, left hemisphere 13.2
2686 Male, age 75, right hemisphere 12.5
1938 Female, age 85, left hemisphere 12.2
Hippocampus, CA1
nTPM: 12.5
1873 Female, age 85, both hemispheres 12.9
2045 Male, age 76, both hemispheres 12.5
2082 Female, age 91, right hemisphere 12.5
2749 Male, age 80, left hemisphere 12.5
2527 Male, age 74, both hemispheres 12.0
Hippocampus, CA2
nTPM: 13.6
1940 Female, age 85, left hemisphere 14.7
1963 Male, age 80, left hemisphere 14.1
2437 Female, age 94, left hemisphere 14.1
2113 Female, age 91, right hemisphere 13.4
1892 Male, age 76, both hemispheres 12.9
2249 Male, age 74, both hemispheres 12.7
Hippocampus, CA3
nTPM: 13.0
1891 Female, age 85, both hemispheres 14.3
1867 Male, age 76, both hemispheres 13.9
2137 Male, age 80, left hemisphere 13.4
2861 Female, age 67, both hemispheres 12.7
2436 Male, age 74, both hemispheres 12.2
2620 Female, age 94, left hemisphere 11.4
Parahippocampal cortex
nTPM: 12.8
2532 Female, age 72, left hemisphere 14.0
2018 Male, age 76, both hemispheres 13.6
2245 Female, age 91, both hemispheres 13.6
1990 Female, age 91, right hemisphere 13.0
2693 Female, age 94, both hemispheres 12.7
1933 Female, age 85, both hemispheres 12.6
1850 Male, age 80, both hemispheres 12.2
2692 Male, age 74, both hemispheres 12.2
2250 Female, age 67, right hemisphere 12.1
2622 Female, age 67, right hemisphere 12.0
Perirhinal gyrus
nTPM: 11.6
2848 Male, age 76, right hemisphere 12.3
2521 Female, age 94, right hemisphere 12.0
1794 Male, age 80, right hemisphere 11.8
1841 Female, age 85, right hemisphere 11.3
1847 Female, age 91, left hemisphere 10.4
Subiculum
nTPM: 14.8
2042 Male, age 76, both hemispheres 17.6
2438 Female, age 94, left hemisphere 17.1
1901 Male, age 80, both hemispheres 14.2
2619 Male, age 74, both hemispheres 13.9
2729 Female, age 91, right hemisphere 13.3
1977 Female, age 85, both hemispheres 12.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.4
Samples: 197

Max nTPM: 50.0
Min nTPM: 3.4
Std nTPM: 7.4
Median nTPM: 14.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 50.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 39.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 38.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 37.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 37.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 32.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 32.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 32.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 32.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 32.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 31.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.7
FF:10153-102I9 76 years, female 17.9
FF:10169-103B7 60 years, female 13.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 2.6
Sample A Female 6.2
Sample B Female 3.5
Sample C Male 5.5
Sample D Male 2.6
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.6
Sample A Female 3.7
Sample B Female 3.0
Sample C Male 3.2
Sample D Male 2.6
Subiculum
nTPM: 3.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Female 3.5
Sample B Female 2.7
Sample C Male 2.9
Sample D Male 2.9
Ventral hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.9
Sample A Female 3.8
Sample B Female 2.9
Sample C Male 4.4
Sample D Male 4.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.5
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.0
Sample A Male 2.9
Sample B Male 2.5
Sample C Female 2.5
Sample D Female 2.0
Hippocampal formation
nTPM: 2.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.3
Sample A Male 2.3
Sample B Male 3.4
Sample C Female 2.4
Sample D Female 2.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
68798232 Antisense, RP_050215_02_A07, Mouse strain C57BL/6J (56 days, male) 2.0

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