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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:13.3 nTPM
HPA:13.3 nTPM
GTEx:11.7 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:22.3 nTPM
Allen mouse:17.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007669
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.3
Sample id Sample description nTPM
Hippocampus
nTPM: 12.5
1898 Male, age 80, left hemisphere 15.9
1855 Male, age 76, left hemisphere 14.4
2529 Female, age 94, left hemisphere 12.5
2621 Female, age 67, right hemisphere 12.4
1911 Female, age 85, right hemisphere 10.6
2148 Female, age 91, left hemisphere 9.4
Dentate gyrus
nTPM: 11.5
2010 Male, age 76, both hemispheres 17.6
1927 Female, age 91, both hemispheres 12.8
2246 Female, age 85, both hemispheres 12.0
2528 Male, age 74, both hemispheres 10.0
2530 Female, age 94, left hemisphere 9.1
2531 Female, age 67, both hemispheres 7.8
Entorhinal gyrus
nTPM: 11.0
2117 Female, age 91, right hemisphere 14.9
1938 Female, age 85, left hemisphere 14.4
1787 Male, age 76, left hemisphere 10.3
2764 Male, age 80, right hemisphere 10.1
2686 Male, age 75, right hemisphere 8.5
2613 Female, age 94, left hemisphere 7.9
Hippocampus, CA1
nTPM: 13.3
2749 Male, age 80, left hemisphere 22.2
1873 Female, age 85, both hemispheres 13.7
2527 Male, age 74, both hemispheres 12.3
2045 Male, age 76, both hemispheres 11.0
2082 Female, age 91, right hemisphere 7.1
Hippocampus, CA2
nTPM: 11.0
1963 Male, age 80, left hemisphere 17.2
1892 Male, age 76, both hemispheres 13.5
2249 Male, age 74, both hemispheres 9.2
2113 Female, age 91, right hemisphere 9.0
1940 Female, age 85, left hemisphere 8.7
2437 Female, age 94, left hemisphere 8.4
Hippocampus, CA3
nTPM: 10.8
2137 Male, age 80, left hemisphere 19.2
1891 Female, age 85, both hemispheres 12.8
1867 Male, age 76, both hemispheres 11.1
2620 Female, age 94, left hemisphere 7.7
2436 Male, age 74, both hemispheres 7.4
2861 Female, age 67, both hemispheres 6.4
Parahippocampal cortex
nTPM: 10.6
1850 Male, age 80, both hemispheres 15.7
2692 Male, age 74, both hemispheres 11.5
1933 Female, age 85, both hemispheres 11.3
2245 Female, age 91, both hemispheres 10.9
1990 Female, age 91, right hemisphere 10.7
2250 Female, age 67, right hemisphere 10.3
2693 Female, age 94, both hemispheres 10.0
2532 Female, age 72, left hemisphere 9.6
2018 Male, age 76, both hemispheres 9.0
2622 Female, age 67, right hemisphere 7.4
Perirhinal gyrus
nTPM: 12.9
1847 Female, age 91, left hemisphere 14.7
1794 Male, age 80, right hemisphere 14.0
1841 Female, age 85, right hemisphere 13.5
2521 Female, age 94, right hemisphere 12.5
2848 Male, age 76, right hemisphere 9.8
Subiculum
nTPM: 12.5
1901 Male, age 80, both hemispheres 14.7
2438 Female, age 94, left hemisphere 13.9
1977 Female, age 85, both hemispheres 13.8
2042 Male, age 76, both hemispheres 12.5
2619 Male, age 74, both hemispheres 11.2
2729 Female, age 91, right hemisphere 8.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.7
Samples: 197

Max nTPM: 17.1
Min nTPM: 7.3
Std nTPM: 1.8
Median nTPM: 11.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 17.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 16.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 16.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 16.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 15.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 15.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 15.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 15.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 15.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 15.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 15.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.3
FF:10153-102I9 76 years, female 44.2
FF:10169-103B7 60 years, female 32.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 54.8
Samples: 4

Max nTPM: 60.5
Min nTPM: 45.3
Sample A Female 60.1
Sample B Female 53.3
Sample C Male 60.5
Sample D Male 45.3
Entorhinal cortex
nTPM: 48.9
Samples: 4

Max nTPM: 51.8
Min nTPM: 45.2
Sample A Female 51.8
Sample B Female 48.2
Sample C Male 50.2
Sample D Male 45.2
Subiculum
nTPM: 48.7
Samples: 4

Max nTPM: 57.9
Min nTPM: 43.8
Sample A Female 57.9
Sample B Female 43.8
Sample C Male 46.9
Sample D Male 46.0
Ventral hippocampus
nTPM: 47.9
Samples: 4

Max nTPM: 56.7
Min nTPM: 41.7
Sample A Female 50.2
Sample B Female 41.7
Sample C Male 42.9
Sample D Male 56.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 20.7
Sample A Male 22.8
Sample B Male 20.7
Sample C Female 20.9
Sample D Female 24.7
Hippocampal formation
nTPM: 21.4
Samples: 4

Max nTPM: 26.0
Min nTPM: 16.9
Sample A Male 18.0
Sample B Male 24.6
Sample C Female 26.0
Sample D Female 16.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.6
68341645 Antisense, RP_041207_01_H09, Mouse strain C57BL/6J (56 days, male) 21.7
74819235 Antisense, RP_060315_02_B11, Mouse strain C57BL/6J (56 days, male) 17.6
70527993 Antisense, RP_050623_01_F01, Mouse strain C57BL/6J (56 days, male) 13.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.