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PMF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.3 nTPM
HPA:33.3 nTPM
GTEx:28.1 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Mouse:5.7 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Hippocampus
nTPM: 31.6
1855 Male, age 76, left hemisphere 32.4
2621 Female, age 67, right hemisphere 31.9
2529 Female, age 94, left hemisphere 31.8
1911 Female, age 85, right hemisphere 31.7
2148 Female, age 91, left hemisphere 31.5
1898 Male, age 80, left hemisphere 30.5
Dentate gyrus
nTPM: 31.3
2528 Male, age 74, both hemispheres 33.4
2010 Male, age 76, both hemispheres 31.9
2246 Female, age 85, both hemispheres 31.3
2530 Female, age 94, left hemisphere 31.2
2531 Female, age 67, both hemispheres 30.6
1927 Female, age 91, both hemispheres 29.5
Entorhinal gyrus
nTPM: 33.3
1787 Male, age 76, left hemisphere 34.0
1938 Female, age 85, left hemisphere 33.9
2117 Female, age 91, right hemisphere 33.2
2613 Female, age 94, left hemisphere 33.0
2764 Male, age 80, right hemisphere 32.9
2686 Male, age 75, right hemisphere 32.6
Hippocampus, CA1
nTPM: 31.0
2527 Male, age 74, both hemispheres 32.2
2082 Female, age 91, right hemisphere 31.2
1873 Female, age 85, both hemispheres 31.1
2045 Male, age 76, both hemispheres 30.2
2749 Male, age 80, left hemisphere 30.2
Hippocampus, CA2
nTPM: 31.1
2249 Male, age 74, both hemispheres 32.1
1940 Female, age 85, left hemisphere 31.7
2113 Female, age 91, right hemisphere 31.2
2437 Female, age 94, left hemisphere 31.2
1892 Male, age 76, both hemispheres 30.4
1963 Male, age 80, left hemisphere 29.9
Hippocampus, CA3
nTPM: 31.1
2861 Female, age 67, both hemispheres 32.7
2620 Female, age 94, left hemisphere 32.0
1867 Male, age 76, both hemispheres 31.6
1891 Female, age 85, both hemispheres 31.2
2436 Male, age 74, both hemispheres 30.4
2137 Male, age 80, left hemisphere 28.7
Parahippocampal cortex
nTPM: 31.6
2692 Male, age 74, both hemispheres 33.7
1850 Male, age 80, both hemispheres 32.2
1933 Female, age 85, both hemispheres 32.0
1990 Female, age 91, right hemisphere 31.9
2018 Male, age 76, both hemispheres 31.8
2532 Female, age 72, left hemisphere 31.6
2693 Female, age 94, both hemispheres 31.1
2622 Female, age 67, right hemisphere 31.0
2250 Female, age 67, right hemisphere 30.5
2245 Female, age 91, both hemispheres 30.4
Perirhinal gyrus
nTPM: 31.4
1794 Male, age 80, right hemisphere 31.8
2848 Male, age 76, right hemisphere 31.7
1847 Female, age 91, left hemisphere 31.4
1841 Female, age 85, right hemisphere 31.0
2521 Female, age 94, right hemisphere 30.9
Subiculum
nTPM: 32.7
2619 Male, age 74, both hemispheres 34.2
1901 Male, age 80, both hemispheres 33.5
2042 Male, age 76, both hemispheres 33.1
1977 Female, age 85, both hemispheres 32.6
2729 Female, age 91, right hemisphere 32.5
2438 Female, age 94, left hemisphere 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.1
Samples: 197

Max nTPM: 55.7
Min nTPM: 6.4
Std nTPM: 7.0
Median nTPM: 27.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 55.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 49.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 47.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 45.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 44.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 41.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 41.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 41.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 40.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 40.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 40.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.9
FF:10153-102I9 76 years, female 49.0
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.7
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.2
Sample A Male 6.1
Sample B Male 6.3
Sample C Female 5.2
Sample D Female 5.2
Hippocampal formation
nTPM: 4.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.0
Sample A Male 5.0
Sample B Male 5.5
Sample C Female 3.0
Sample D Female 5.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
74822930 Antisense, RP_060321_01_A03, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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