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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.3 nTPM
HPA:38.3 nTPM
GTEx:30.6 nTPM
FANTOM5:3.6 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:47.3 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
2586 Male, age 75, left hemisphere 43.2
2666 Male, age 74, left hemisphere 41.5
1827 Male, age 72, unknown 38.9
1833 Male, age 53, unknown 38.7
2828 Female, age 72, unknown 38.6
1870 Female, age 42, unknown 37.9
2219 Male, age 76, both hemispheres 37.0
1830 Male, age 51, unknown 36.7
2411 Female, age 72, unknown 36.0
2019 Male, age 18, unknown 34.4
Dorsal raphe nucleus
nTPM: 36.1
2016 Female, age 72, unknown 36.8
1828 Male, age 53, unknown 36.7
2047 Male, age 72, unknown 36.4
2298 Female, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 34.7
Inferior colliculus
nTPM: 37.7
2849 Male, age 72, unknown 40.7
1848 Female, age 42, unknown 38.2
1890 Male, age 53, unknown 36.5
2097 Female, age 72, unknown 35.5
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 35.5
2334 Male, age 80, both hemispheres 38.0
1921 Female, age 85, both hemispheres 36.9
2338 Male, age 61, both hemispheres 31.6
Periaquaductal grey, anterior
nTPM: 37.9
1947 Male, age 18, unknown 38.5
2502 Female, age 75, unknown 38.1
1795 Male, age 51, unknown 37.1
Periaquaductal grey, dorsal
nTPM: 36.8
1840 Male, age 53, unknown 39.7
2850 Male, age 76, both hemispheres 37.6
2464 Female, age 72, unknown 35.5
1831 Male, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 34.6
2053 Male, age 18, unknown 36.8
2140 Male, age 76, both hemispheres 34.9
2272 Male, age 74, both hemispheres 32.1
Pretectal area
nTPM: 36.3
2825 Male, age 18, unknown 39.1
1816 Male, age 51, unknown 37.9
1817 Female, age 42, unknown 37.6
2007 Male, age 72, unknown 37.6
2407 Male, age 75, both hemispheres 37.2
1815 Male, age 53, unknown 36.7
2667 Female, age 75, unknown 36.4
2224 Female, age 72, unknown 36.0
1944 Female, age 72, unknown 35.9
2316 Male, age 76, right hemisphere 33.3
2273 Male, age 74, both hemispheres 31.5
Red nucleus
nTPM: 36.2
2584 Male, age 75, left hemisphere 40.1
2227 Male, age 72, unknown 37.3
2588 Male, age 74, left hemisphere 37.3
2769 Male, age 72, unknown 37.2
2503 Female, age 72, unknown 37.1
1821 Female, age 72, unknown 36.4
2725 Female, age 75, unknown 35.9
2823 Male, age 76, right hemisphere 35.0
1954 Female, age 42, unknown 34.9
1904 Male, age 53, unknown 34.5
2785 Male, age 18, unknown 34.4
1865 Male, age 51, unknown 33.8
Substantia nigra
nTPM: 37.9
2665 Male, age 74, both hemispheres 42.8
2699 Male, age 18, unknown 40.3
1916 Female, age 42, unknown 39.9
2583 Male, age 75, right hemisphere 39.0
1851 Male, age 51, unknown 37.9
1889 Female, age 72, unknown 37.6
2590 Female, age 75, unknown 36.3
1941 Male, age 53, unknown 36.1
2241 Male, age 72, unknown 35.3
2409 Female, age 72, unknown 33.6
Superior colliculus
nTPM: 36.6
2664 Male, age 75, both hemispheres 41.2
1839 Male, age 51, unknown 39.1
1796 Male, age 53, unknown 38.6
2668 Female, age 75, unknown 37.7
1895 Male, age 76, right hemisphere 36.1
2587 Male, age 74, left hemisphere 35.9
2087 Female, age 72, unknown 35.5
2261 Male, age 18, unknown 34.2
1913 Female, age 42, unknown 34.0
1995 Male, age 72, unknown 34.0
Ventral tegmental area
nTPM: 37.1
1915 Female, age 42, unknown 39.0
2410 Female, age 72, unknown 37.5
1942 Male, age 51, unknown 37.4
2223 Female, age 72, unknown 37.4
2218 Male, age 76, both hemispheres 36.2
2021 Male, age 53, unknown 35.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 43.9
Min nTPM: 21.9
Std nTPM: 4.1
Median nTPM: 30.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 41.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 40.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 39.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 39.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 38.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 38.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 37.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 36.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.6
FF:10158-103A5 76 years, female 3.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 43.1
Min nTPM: 31.1
Sample A Female 43.1
Sample B Female 43.1
Sample C Male 31.1
Sample D Male 37.5
Periaqueductal gray
nTPM: 36.4
Samples: 3

Max nTPM: 38.8
Min nTPM: 34.0
Sample B Female 36.4
Sample C Male 38.8
Sample D Male 34.0
Substantia nigra
nTPM: 43.8
Samples: 4

Max nTPM: 54.9
Min nTPM: 33.5
Sample A Female 47.2
Sample B Female 33.5
Sample C Male 54.9
Sample D Male 39.7
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 44.3
Min nTPM: 22.9
Sample A Female 42.9
Sample B Female 22.9
Sample C Male 35.7
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 48.9
Min nTPM: 45.0
Sample A Male 46.6
Sample B Male 45.0
Sample C Female 48.9
Sample D Female 48.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
70445574 Antisense, RP_050614_04_B04, Mouse strain C57BL/6J (56 days, male) 3.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.